Table 5.

Alignment metrics used in the evaluation

Alignment Metric	DNA-Seq WGS	DNA-Seq WES	RNA-Seq
Mapping Statistics Duplicate	✓	✓	✓
Statistics Sequencing Error Rates	✓	✓	✓
Base Content Distribution Read	✓	✓	✓
Length Distribution Base Quality	✓	✓	✓
Distribution Coverage Histogram	✓	✓	✓
Insert Size Distribution InDel Size	✓	✓	✓
Distribution InDel Context	✓	✓	✓
GC Content	✓	✓	✓
On-Target Rate		✓
Target Coverage Distribution		✓
Spliced Alignments			✓
Feature Counting	✓	✓	✓
Feature Annotation	✓	✓	✓

The absence of tick indicates that the specific metric is not available for that aligner