Table 1.
Epidemiological and genotyping data on 42 MRSA isolates from known, well-characterized outbreaks as well as sporadic cases. The collection date is represented by the month and year of the bacterial isolation from the clinical sample. The outbreak ID describes isolates selected among outbreaks (O) and sporadic cases (S) with the following number (1, 2, 3 or 4) representing the lineage (according to the previous genotyping methods; fourth column) and the letters (A, B, C, D or E) representing different outbreaks
|
Isolate |
Collection date |
Outbreak ID |
Lineage |
|---|---|---|---|
|
MRSA_01 |
Feb-2004 |
O-1A |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_02 |
Aug-2004 |
O-1B |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_03 |
Oct-2004 |
O-1B |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_04 |
Apr-2005 |
O-1E |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_05 |
Jun-2007 |
O-1C |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_06 |
Jun-2007 |
O-1C |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_07 |
Jun-2007 |
O-1C |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_08 |
Jul-2007 |
O-1C |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_09 |
Jul-2007 |
O-1C |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_10 |
Aug-2010 |
O-1D |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_11 |
Aug-2010 |
O-1D |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_12 |
Nov-2012 |
S-1 |
ST8-t304-SCCmecIV-PVLneg (lineage 1) |
|
MRSA_13 |
Aug-2010 |
O-2D |
t223-PVLneg (lineage 2) |
|
MRSA_14 |
Dec-2010 |
O-2E |
t223-PVLneg (lineage 2) |
|
MRSA_15 |
Mar-2011 |
O-2D |
t223-PVLneg (lineage 2) |
|
MRSA_16 |
Jul-2011 |
O-2C |
t223-PVLneg (lineage 2) |
|
MRSA_17 |
Feb-2012 |
O-2B |
t223-PVLneg (lineage 2) |
|
MRSA_18 |
Mar-2012 |
O-2B |
t223-PVLneg (lineage 2) |
|
MRSA_19 |
Jun-2012 |
O-2C |
t223-PVLneg (lineage 2) |
|
MRSA_20 |
Aug-2012 |
O-2A |
t223-PVLneg (lineage 2) |
|
MRSA_21 |
Aug-2012 |
O-2A |
t223-PVLneg (lineage 2) |
|
MRSA_22 |
Oct-2006 |
O-3B |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_23 |
Nov-2006 |
O-3B |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_24 |
Dec-2006 |
O-3G |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_25 |
Jan-2007 |
O-3G |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_26 |
Jan-2007 |
O-3G |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_27 |
Sep-2007 |
O-3F |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_28 |
Sep-2007 |
O-3F |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_29 |
Nov-2007 |
O-3E |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_30 |
Nov-2007 |
O-3E |
ST5-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_31 |
Dec-2009 |
O-3D |
ST1637-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_32 |
Dec-2009 |
O-3D |
ST1637-t002-SCCmecIV-PVLneg (lineage 3) |
|
MRSA_33 |
Jan-2011 |
O-3C |
t002-PVLneg (lineage 3) |
|
MRSA_34 |
Jan-2011 |
O-3C |
t002-PVLneg (lineage 3) |
|
MRSA_35 |
Oct-2011 |
O-3A |
t002-PVLneg (lineage 3) |
|
MRSA_36 |
Oct-2011 |
O-3A |
t002-PVLneg (lineage 3) |
|
MRSA_37 |
Oct-2011 |
O-3A |
t002-PVLneg (lineage 3) |
|
MRSA_38 |
Oct-2011 |
O-3A |
t002-PVLneg (lineage 3) |
|
MRSA_39 |
Oct-04 |
S-4 |
ST772-t657-SCCmecV-PVLpos (lineage 4) |
|
MRSA_40 |
Aug-13 |
S-4 |
ST772-t657-SCCmecV-PVLpos (lineage 4) |
|
MRSA_41 |
Dec-13 |
O-4A |
ST772-t657-SCCmecV-PVLpos (lineage 4) |
|
MRSA_42 |
Jan-14 |
O-4B |
ST772-t657-SCCmecV-PVLpos (lineage 4) |
ST, sequence type; t, spa-typing; PVLneg/pos, isolate negative or positive for the genes encoding the Panton-Valentine leukocidin.