Table 1.
Summary description of the high-level WGS-based genogroups enrolling at least ten isolates
|
High-level WGS-based genogroup |
Most common MLST ST (%) |
2nd most common MLST ST (%) |
Most common NG-MAST ST (%) |
2nd most common NG-MAST ST (%) |
Most common NG-STAR ST (%) |
2nd most common NG-STAR ST (%) |
No. of enrolled isolates |
No. of enrolled countries |
Isolate collection date interval |
No. of enrolled countries with at least five isolates |
|---|---|---|---|---|---|---|---|---|---|---|
|
G001 |
9363 (38.2) |
1580 (18.6) |
2992 (40.1) |
9768 (7.0) |
63 (42.6) |
301 (8.0) |
817 |
20 |
2003–2017 |
15 |
|
G002 |
1901 (82.8) |
1579 (6.3) |
1407 (48.8) |
2212 (3.0) |
90 (72.5) |
89 (2.3) |
574 |
20 |
2004–2017 |
19 |
|
G005 |
1901 (98.5) |
11992 (0.4) |
225 (67.2) |
5967 (3.6) |
26 (70.4) |
310 (6.9) |
274 |
15 |
2004–2017 |
5 |
|
G004 |
7363 (97.6) |
1587 (1.4) |
2400 (55.9) |
6360 (14.2) |
158 (74.9) |
419 (9.0) |
211 |
17 |
2010–2017 |
8 |
|
G003 |
11990 (60.4) |
1594 (35.6) |
51 (35.1) |
25 (34.2) |
20 (59.4) |
722 (9.4) |
202 |
10 |
2005–2017 |
4 |
|
G006 |
1579 (100.0) |
– |
21 (32.0) |
1034 (19.3) |
139 (94.7) |
856 (2.0) |
150 |
13 |
2004–2017 |
7 |
|
G007 |
1918 (99.3) |
10305 (0.7) |
12 (57.3) |
44 (32.9) |
239 (89.5) |
1510 (10.5) |
143 |
1 |
1995–2014 |
1 |
|
G010 |
1584 (86.6) |
11172 (9.0) |
26 (62.7) |
4528 (11.2) |
178 (89.6) |
410 (3.0) |
134 |
7 |
2002–2016 |
3 |
|
G012 |
8122 (100.0) |
– |
292 (75.2) |
210 (21.7) |
299 (76.7) |
85 (19.4) |
129 |
6 |
2003–2015 |
3 |
|
G009 |
7822 (95.0) |
11985 (1.7) |
4995 (67.2) |
10421 (19.3) |
416 (89.1) |
72 (2.5) |
119 |
11 |
2012–2017 |
3 |
|
G008 |
1588 (76.7) |
11247 (13.3) |
3785 (11.1) |
1582 (8.9) |
247 (18.9) |
870 (13.3) |
90 |
16 |
2005–2017 |
6 |
|
G011 |
11 516 (95.0) |
11 980 (5.0) |
1780 (58.8) |
5793 (16.3) |
56 (67.5) |
55 (27.5) |
80 |
6 |
2008–2016 |
2 |
|
G014 |
8143 (96.7) |
11968 (1.6) |
5624 (45.9) |
9918 (34.4) |
426 (42.6) |
436 (36.1) |
61 |
13 |
2012–2017 |
4 |
|
G025 |
1893 (100.0) |
– |
8517 (92.9) |
5993 (3.6) |
142 (100.0) |
– |
56 |
3 |
2011–2016 |
1 |
|
G013 |
1582 (72.2) |
11727 (13.0) |
147 (24.1) |
2997 (9.3) |
186 (72.2) |
896 (7.4) |
54 |
9 |
2003–2014 |
3 |
|
G018 |
1596 (100.0) |
– |
384 (40.5) |
190 (19.0) |
955 (66.7) |
307 (26.2) |
42 |
4 |
2003–2014 |
1 |
|
G019 |
1588 (100.0) |
– |
1479 (40.5) |
19083 (40.5) |
271 (48.6) |
433 (48.6) |
37 |
5 |
2005–2017 |
2 |
|
G015 |
8135 (97.1) |
11997 (2.9) |
987 (55.9) |
5120 (17.6) |
729 (94.1) |
New (2.9) |
34 |
10 |
2013–2017 |
3 |
|
G016 |
1599 (68.8) |
~1599 (31.3) |
645 (62.5) |
11461 (25.0) |
520 (100.0) |
– |
32 |
4 |
2013–2017 |
3 |
|
G017 |
8163 (58.6) |
11975 (31.0) |
2 (65.5) |
226 (10.3) |
84 (86.2) |
424 (6.9) |
29 |
7 |
2005–2015 |
2 |
|
G020 |
7826 (57.1) |
7359 (42.9) |
2487 (57.1) |
4186 (19.0) |
992 (57.1) |
231 (38.1) |
21 |
6 |
2008–2016 |
1 |
|
G021 |
8156 (100.0) |
– |
5441 (68.4) |
13489 (10.5) |
442 (84.2) |
982 (5.3) |
19 |
8 |
2013–2017 |
1 |
|
G022 |
1892 (100.0) |
– |
6129 (36.8) |
387 (26.3) |
563 (94.7) |
867 (5.3) |
19 |
5 |
2008–2013 |
1 |
|
G027 |
7827 (86.7) |
13489 (6.7) |
2318 (20.0) |
8845 (13.3) |
38 (46.7) |
1225 (13.3) |
15 |
4 |
2013–2017 |
1 |
|
G039 |
8776 (100.0) |
– |
1285 (100.0) |
– |
950 (100.0) |
– |
15 |
4 |
2012–2014 |
1 |
|
G023 |
11986 (100.0) |
– |
8465 (85.7) |
26 (7.1) |
162 (85.7) |
432 (7.1) |
14 |
2 |
2012–2015 |
1 |
|
G029 |
1588 (100.0) |
– |
10801 (42.9) |
11575 (42.9) |
969 (50.0) |
970 (21.4) |
14 |
2 |
2013 |
2 |
|
G024 |
10932 (76.9) |
11967 (15.4) |
5004 (15.4) |
4234 (15.4) |
169 (46.2) |
388 (30.8) |
13 |
5 |
2008–2014 |
1 |
|
G031 |
11 956 (91.7) |
8130 (8.3) |
New (83.3) |
7414 (16.7) |
2005 (83.3) |
949(16.7) |
12 |
3 |
2013–2015 |
1 |
|
G026 |
7367 (91.7) |
1579 (8.3) |
40 (16.7) |
18167 (16.7) |
New (33.3) |
733 (25.0) |
12 |
2 |
2003–2009 |
1 |
|
G030 |
1590 (100.0) |
– |
684 (45.5) |
5519 (18.2) |
1559 (45.5) |
190 (27.3) |
11 |
2 |
2004–2013 |
1 |
|
G041 |
11177 (100.0) |
– |
1993 (100.0) |
– |
568 (100.0) |
– |
11 |
1 |
2013 |
1 |
|
G032 |
1585 (100.0) |
– |
471 (60.0) |
752 (20.0) |
153 (80.0) |
913 (20.0) |
10 |
3 |
2004–2013 |
1 |
|
G028 |
8112 (100.0) |
– |
8149 (40.0) |
5560 (20.0) |
352 (60.0) |
468 (40.0) |
10 |
2 |
2008–2017 |
1 |
|
G036 |
8114 (100.0) |
– |
4 (40.0) |
~69 (30.0) |
46 (100.0) |
– |
10 |
1 |
2004–2011 |
1 |