Table 2.
Summary description of the low-level WGS-based genogroups enrolling at least ten isolates
|
Low-level WGS-based genogroup |
Most common MLST ST (%) |
2nd most common MLST ST (%) |
Most common NG-MAST ST (%) |
2nd most common NG-MAST ST (%) |
Most common NG-STAR ST (%) |
2nd most common NG-STAR ST (%) |
No. of enrolled isolates |
No. of enrolled countries |
Isolate collection date interval |
No. of enrolled countries with at least five isolates |
|---|---|---|---|---|---|---|---|---|---|---|
|
G002.001 |
1901 (83.9) |
1579 (6.6) |
1407 (55.8) |
2212 (3.4) |
90 (82.7) |
951 (2.6) |
502 |
20 |
2007–2017 |
18 |
|
G001.002 |
9363 (52.7) |
11428 (19.0) |
2992 (58.5) |
3935 (8.8) |
63 (69.7) |
67 (7.7) |
491 |
19 |
2009–2017 |
14 |
|
G005.004 |
1901 (99.0) |
11992 (0.4) |
225 (67.4) |
5967 (3.7) |
26 (70.7) |
310 (7.0) |
273 |
15 |
2004–2014 |
5 |
|
G004.003 |
7363 (97.6) |
1587 (1.4) |
2400 (56.2) |
6360 (14.3) |
158 (79.5) |
419 (8.6) |
210 |
17 |
2010–2017 |
8 |
|
G006.007 |
1579 (100.0) |
– |
21 (32.0) |
1034 (19.3) |
139 (94.7) |
856 (2.0) |
150 |
13 |
2004–2017 |
7 |
|
G001.005 |
1580 (77.0) |
8126 (19.6) |
9768 (38.5) |
359 (18.2) |
1996 (34.5) |
192 (27.7) |
148 |
7 |
2003–2017 |
4 |
|
G007.008 |
1918 (99.2) |
10305 (0.8) |
12 (62.1) |
44 (35.6) |
239 (88.6) |
1510 (11.4) |
132 |
1 |
1995–2000 |
1 |
|
G003.006 |
11 990 (93.1) |
1594 (4.6) |
25 (46.6) |
51 (43.5) |
20 (65.6) |
722 (14.5) |
131 |
5 |
2008–2017 |
1 |
|
G012.013 |
8122 (100.0) |
– |
292 (75.2) |
210 (21.7) |
299 (76.7) |
85 (19.4) |
129 |
6 |
2003–2015 |
3 |
|
G009.009 |
7822 (95.0) |
11985 (1.7) |
4995 (67.2) |
10421 (19.3) |
416 (89.1) |
72 (2.5) |
119 |
11 |
2012–2017 |
3 |
|
G010.010 |
1584 (88.1) |
11172 (10.2) |
26 (70.3) |
4528 (12.7) |
178 (95.8) |
423 (1.7) |
118 |
5 |
2002–2015 |
2 |
|
G011.011 |
11516 (95.0) |
11980 (5.0) |
1780 (58.8) |
5793 (16.3) |
56 (67.5) |
902 (3.8) |
80 |
6 |
2008–2016 |
2 |
|
G008.012 |
1588 (80.0) |
11247 (20.0) |
3785 (16.7) |
1582 (13.3) |
247 (23.3) |
567 (13.3) |
60 |
16 |
2005–2017 |
3 |
|
G001.015 |
1580 (59.0) |
11999 (39.3) |
995 (64.3) |
1313 (10.7) |
301 (42.9) |
245 (42.9) |
56 |
6 |
2005–2014 |
2 |
|
G025.030 |
1893 (100.0) |
– |
8517 (100.0) |
– |
142 (100.0) |
– |
52 |
3 |
2013–2016 |
1 |
|
G001.024 |
11864 (98.0) |
12521(2.0) |
2992 (78.4) |
~5230 (9.8) |
439 (86.3) |
453 (9.8) |
51 |
3 |
2013–2015 |
1 |
|
G001.014 |
9363 (100.0) |
– |
7445 (76.6) |
11500 (6.4) |
301 (70.2) |
965 (10.6) |
47 |
5 |
2013–2017 |
1 |
|
G019.022 |
1588 (100.0) |
– |
1479 (41.7) |
19083 (41.7) |
433 (50.0) |
271 (47.2) |
36 |
5 |
2005–2014 |
2 |
|
G015.016 |
8135 (97.1) |
11997 (2.9) |
987 (55.9) |
5120 (17.6) |
729 (94.1) |
~729 (2.9) |
34 |
10 |
2013–2017 |
3 |
|
G002.017 |
1901 (91.2) |
11107(8.8) |
3150 (14.7) |
2018 (14.7) |
127 (23.5) |
150 (17.6) |
34 |
7 |
2004–2017 |
2 |
|
G016.018 |
1599 (68.8) |
~1599 (31.3) |
645 (62.5) |
11461 (25.0) |
520 (100.0) |
– |
32 |
4 |
2013–2017 |
3 |
|
G014.020 |
8143 (96.7) |
11971 (3.3) |
5624 (93.3) |
1691 (3.3) |
426 (86.7) |
890 (6.7) |
30 |
9 |
2012–2017 |
3 |
|
G013.021 |
1582 (100.0) |
– |
147 (36.7) |
2997 (16.7) |
186 (66.7) |
752 (10) |
30 |
5 |
2003–2013 |
3 |
|
G018.025 |
1596 (100.0) |
– |
384 (56.7) |
190 (26.7) |
955 (93.3) |
307 (6.7) |
30 |
3 |
2003–2014 |
1 |
|
G017.019 |
8163 (55.6) |
11975 (33.3) |
2 (70.4) |
226 (7.4) |
84 (85.2) |
424 (7.4) |
27 |
7 |
2005–2015 |
2 |
|
G003.023 |
1594 (100.0) |
– |
51 (63.6) |
8148 (22.7) |
851 (77.3) |
2014 (13.6) |
22 |
2 |
2005–2017 |
1 |
|
G014.038 |
8143 (100.0) |
– |
9918 (95.5) |
15909 (4.5) |
436 (100.0) |
– |
22 |
2 |
2014–2017 |
1 |
|
G003.036 |
1594 (100.0) |
– |
10800 (68.4) |
11042 (31.6) |
20 (100.0) |
– |
19 |
3 |
2013 |
2 |
|
G021.029 |
8156 (100.0) |
– |
5441 (72.2) |
13489 (11.1) |
442 (88.9) |
New (5.6) |
18 |
7 |
2013–2017 |
1 |
|
G008.026 |
1588 (100.0) |
– |
3307 (43.8) |
9171 (12.5) |
249 (37.5) |
53 (25) |
16 |
6 |
2009–2013 |
1 |
|
G039.037 |
8776 (100.0) |
– |
1285 (100.0) |
– |
950 (100.0) |
– |
15 |
4 |
2012–2014 |
1 |
|
G023.027 |
11986 (100.0) |
– |
8465 (85.7) |
26 (7.1) |
162 (85.7) |
432 (7.1) |
14 |
2 |
2012–2015 |
1 |
|
G029.032 |
1588 (100.0) |
– |
10801 (42.9) |
11575 (42.9) |
969 (50.0) |
970 (21.4) |
14 |
2 |
2013 |
2 |
|
G013.028 |
11727 (53.8) |
7363 (46.2) |
1466 (30.8) |
4333 (23.1) |
186 (84.6) |
1347 (7.7) |
13 |
1 |
2005–2009 |
1 |
|
G020.031 |
7826 (100.0) |
– |
2487 (100.0) |
– |
992 (100.0) |
– |
12 |
3 |
2008–2013 |
1 |
|
G041.040 |
11177 (100.0) |
– |
1993 (100.0) |
– |
568 (100.0) |
– |
11 |
1 |
2013 |
1 |
|
G031.044 |
11956 (90.0) |
8130 (10.0) |
New (100.0) |
– |
2005 (100.0) |
– |
10 |
1 |
2014–2015 |
1 |
|
G036.034 |
8114 (100.0) |
– |
4 (40.0) |
~69 (30.0) |
46 (100.0) |
– |
10 |
1 |
2004–2011 |
1 |