TABLE 1.
Summary of epigenetic clocks used in the study
Clock | Type | Tissue | Outcome | Publication | Notes |
---|---|---|---|---|---|
Horvath | Intrinsic | Multiple | Chronological age | Horvath (2013) | Inaccessible tissues primarily from tissue‐adjacent normal samples in The Cancer Genome Atlas (see publication) |
IEAA | Intrinsic | Multiple | Chronological age | Quach et al. (2017) | Uses same CpGs as Horvath clock, but reweighted as described in Quach et al. to minimize influence of cell composition |
Hannum | Extrinsic | Whole blood | Chronological age | Hannum et al. (2013) | Highly correlated with aging‐related changes in blood cell composition |
EEAA | Extrinsic | Whole blood | Chronological age | Quach et al. (2017) | Uses same CpGs as Hannum clock, but reweighted as described in Quach et al. to maximize influence of cell composition |
SkinAndBloodClock | Intrinsic | Whole blood, fibroblasts | Chronological age | Horvath et al. (2018) | Created to address poor age prediction in Horvath clock in skin and whole blood |
PhenoAge | Extrinsic | Whole blood | Time to death | Levine et al. (2018) | PhenoAge is measure of mortality risk derived from National Health and Nutrition Examination Survey using the following markers: albumin, creatinine, serum glucose, log C‐reactive protein, lymphocyte percent, mean red cell volume, red cell distribution width, alkaline phosphatase, white blood cell count, and age (see publication for details) |
GrimAge | Extrinsic | Whole blood | Time to death | Lu, Quach, et al. (2019) | Methylation is used to predict eight surrogate biomarkers: Adrenomedullin (ADM), Beta‐2‐Microglobulin (B2M), Cystatin C, Growth Differentiation Factor 15 (GDF15), Leptin, Serpin Family E Member 1 (SERPINE/PAI1), TIMP Metalloproteinase Inhibitor 1 (TIMP1), smoking pack‐years (PACKYRS). The predicted values of those biomarkers are used to predict mortality (see publication for details) |
Abbreviations: EEAA, extrinsic epigenetic age acceleration; IEAA, intrinsic epigenetic age acceleration.