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. 2021 May 24;7(6):814–825. doi: 10.1038/s41477-021-00920-2

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 7 — Network showing the association of significantly changed biological function GO terms (pie charts; adjusted p < 0.05) with different DEGs (small nodes) obtained by pairwise comparison in Col-0 transcriptome experiments. Size of pie charts corresponds to number of DEGs. Linked GO terms indicate shared genes (Jaccard similarity > 0.2). Closely gathered GO terms form clusters in the network showing similar functions (indicated with dash lines), and heatmaps for GO clusters corresponding to the average scaled counts of transcripts for each treatment are drawn on the sides. The position of clusters is arranged according to topology. Clusters and DEGs correspond to Fig. 3b.