Table 1.
Reference | Sample number | Species | Sample | Disease states vs control | Bacterial population evaluation | Increased bacterial population | Decreased bacterial population |
---|---|---|---|---|---|---|---|
Roesch et al. [23] | 10/10 | Rats | Feces | T1D vs normal | 16S rRNA sequencing | Bacteroides, Eubacterium, Ruminococcus | Lactobacillus, Bryantella, Bifidobacterium, Turicibacter |
Hu et al. [134] | 39T1D/24 normal | Mouse | Feces | Pre-T1D vs normal | Gram-negative, Gram-positive | Bacteroidetes Erysipelotrichaceae | |
Leiva-Gea et al. [37] | 15T1D/13 normal | Human | Feces | T1D vs normal | 16S rRNA sequencing | Bacteroides, Ruminococcus, Veillonella, Blautia, Streptococcus | Bifidobacterium, Roseburia, Faecalibacterium, Lachnospira |
Murri et al. [36] | 16T1D/16 normal | Human | Feces | T1D vs normal | PCR-DGGE and RT-qPCR | Clostridium, Bacteroides, Veillonella | Lactobacillus, Bifidobacterium, Blautia coccoides/Eubacterium rectale, Prevotella |
de Goffau et al. [39] | 18T1D/18 normal | Human | Feces | T1D vs normal | 16S rRNA sequencing | Bacteroides | Bifidobacterium adolescentis, Bifidobacterium pseudocatenulatum |
Giongo et al. [38] | 4T1D/4 normal | Human | Feces | T1D vs normal | 16S rRNA sequencing | Bacteroides ovatus | Firmicutes |
Davis- Richardson et al. [135] | 29T1D/47 normal | Human | Feces | T1D vs normal | 16S rRNA sequencing | Bacteroides dorei, Bacteroides vulgatus | NA |
Huang et al. [42] | 12T1D/10 normal | Human | Feces | T1D vs normal | 16S rRNA sequencing | Bacteroidetes | Firmicutes |
Zhu et al. [14] | 41MAP/59MSAP/30SAP/35 normal | Human | Feces | SAP vs MAP and MSAP | 16S rRNA sequencing | Escherichia-Shigella | Blautia |
Zhang et al. [136] | 45AP/44 normal | Human | Feces | AP vs normal | 16S rRNA sequencing | Bacteroidetes, Proteobacteria | Firmicutes, Actinobacteria |
Tan et al. [78] | 32MAP//44SAP/32 normal | Human | Feces | AP vs normal | PCR-DGGE and RT-qPCR | Enterobacteriaceae, Enterococcus | Bifidobacterium |
Chen et al. [65] | 20 AP/20 normal | Rats | Feces | AP vs normal | 16S rRNA sequencing | Escherichia-Shigella, Phascolarctobacterium | Saccharibacteria, Tenericutes |
Han et al. [92] | 8CP/8 normal | Mouse | Colon feces | CP vs normal | 16S rRNA sequencing | Bacteroides, Alloprevotella | Lachnospiraceae_NK4A136, Ruminiclostridium, Roseburia |
Zhou et al. [100] | 71CP/69 normal | Human | Feces | CP vs normal | 16S rRNA sequencing | Proteobacteria | Firmicutes, Actinobacteria |
Jandhyala et al. [104] | 30CP/10 normal | Human | Feces | CP vs normal | 16S rRNA sequencing | Firmicutes/Bacteroidetes | Faecalibacterium prausnitzii, Ruminococcus bromii |
Gorovits et al. [137] | 96 CP | Human | Feces | CP vs normal | gas-liquid chromatography analysis | Enterobacter, Proteus, Klebsiella, Morganella | Bifidobacterium, Lactobacillus |
Farrell et al. [115] | 27CP/28 normal | Human | Oral | CP vs normal | qPCR | Streptococcus mitis | Granulicatella adiacens |
Michaud et al. [138] | 405PC/416 normal | Human | Plasma | PC vs normal | Antibiotics to oral bacteria | Porphyromonas gingivalis | Streptococcus mitis |
Fan et al. [139] | 361/371 normal | Human | Oral | PC vs normal | 16S rRNA sequencing | Porphyromonas gingivalis, Aggregatibacter actinomycetemcomitans | Fusobacteria, Leptotrichia |
Torres et al. [140] | 8PC/22 normal | Human | Oral | PC vs normal | 16S rRNA sequencing | Leptotrichia, Bacteroides, | Porphyromonas gingivalis, Neisseria elongate, Aggregatibacter actinomycetemcomitans |
Half et al. [141] | 15PC/15 normal | Human | Feces | PC vs normal | 16S rRNA sequencing | Bacteroides Verrucomicrobia, Sutterella, Veillonella, Bacteroides, Odoribacter and Akkermansia | Firmicutes, Actinobacteria |
Lin et al. [142] | 13PC/12 normal | Human | Oral | PC vs normal | 16S rRNA sequencing | Bacteroides | Corynebacterium |
Farrell et al. [115] | 38PC /38 normal | Human | Oral | PC vs normal | 16S microarray | Granulicatella adiacens | Neisseria elongate, Streptococcus mitis |
Ren et al. [129] | 85PC/57 normal | Human | Feces | PC vs normal | 16S rRNA sequencing | Bacteroidetes | Firmicutes, Proteobacteria |
T1D type 1 diabetes, AP acute pancreatitis, MAP mild acute pancreatitis, MSAP moderately severe AP, SAP severe acute pancreatitis, CP chronic pancreatitis, PC pancreatic cancer, qPCR real-time quantitative PCR, SAP severe acute pancreatitis.