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. 2021 Apr 26;23:e00124. doi: 10.1016/j.fawpar.2021.e00124

Table 6.

Summary of PCR oligonucleotides used for detection of microsporidia (Encephalitozoon intestinalis, Encephalitozoon cuniculi, Enterocytozoon bieneusi, Encephalitozoon hellem) and Toxocara spp. in fresh produce.

Type of PCR Target gene Sequence Amplicon size (bp) Note Reference
Nested 18S rRNA (Encephalitozoon spp., E. bieneusi) 1st: PMicF: 5′- GGTTGATTCTGCCTGACG -3′; PMicR: 5′ − CTTGCGAGC(G/A)TACTATCC -3′ 779 Positive samples sequenced. Javanmard et al. (2018)
2nd: EnbF: 5′- GGTAATTTGGTCTCTGTGTG -3′; EnbR: 5′- CTACACTCCCTATCCGTTC -3′ 440
EncepF: 5′- AGTACGATGATTTGDTTG-3′; EncepR: 5′- ACATAAGTCCAAGARCACA -3′ 530
conventional ITS (E. bieneusi) AL4038: 5′-AGGGATGAAGAGCTTCGGCTCTG-3′; AL4040: 5′-AATATCCCTAATACAGGATCACT-3′ 392 Positive samples sequenced. Li et al. (2019)
conventional nad2 (Toxocara spp.) F: 5′-GGAGTTGTTTAAGTTGGATGG-3′; R: 5′ -AGAACTCCGCCTTATCAAGACGAC-3´ 227 Guggisberg et al. (2020)