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. 2021 May 4;7(5):000552. doi: 10.1099/mgen.0.000552

Table 2.

Brucella reads and species prediction from naturally contaminated raw milk samples

Sample no.

DNA extraction kit*

blast confirmed Brucella -specific reads

Predicted species

Mash Screen

RefSNPer

64

c

2

np

B. abortus

64

d

155

B. suis

B. abortus

69

c

24

np

B. abortus

69

d

810

B. melitensis

B. melitensis

118

c

0

np

np

118

d

56

np

B. ceti

119

c

50

B. suis

B. abortus

119

d

225

B. suis

B. ovis

151

c

2787

B. suis

B. melitensis

151

d

112 627

B. melitensis

B. melitensis

np, No prediction.

*c, Conventional DNA extraction; d, DNA extraction after eukaryotic cell depletion.