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. 2021 Jun 11;2(2):100603. doi: 10.1016/j.xpro.2021.100603
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-human CD34 FITC (4H11) eBioscience Cat# 11-0349-42; RRID: AB_1518732

Biological samples

Fresh human umbilical cord blood StemCyte https://www.stemcyte.com/

Chemicals, peptides, and recombinant proteins

Puromycin Dihydrochloride Sigma-Aldrich Cat# P8833; CAS: 58-58-2
Bovine Serum Albumin solution Sigma-Aldrich Cat# A7034; CAS: 9048-46-8
Recombinant Human IL-6 PeproTech Cat# 200-06
Recombinant Human IL-3 PeproTech Cat# 200-03
Recombinant Human SCF PeproTech Cat# 300-07
L-Glutamine (200 mM) Thermo Fisher Scientific Cat# 25030-081
Sodium Pyruvate (100 mM) Thermo Fisher Scientific Cat# 11360-070
Penicillin Streptomycin Thermo Fisher Scientific Cat# 15-140-122
Plasmocin prophylactic InvivoGen Cat# ant-mpp
M-PER Mammalian Protein Extraction Reagent Thermo Fisher Scientific Cat# 78501
Ficoll Paque Plus GE Healthcare Cat# 17-1440-02
DMEM, high glucose, with pyruvate Life Technologies Cat# 11995-073
X-tremeGENE HP DNA Transfection Reagent Sigma-Aldrich Cat# 6366546001
RetroNectin® Recombinant Human Fibronectin Fragment Takara Bio Inc. Cat# T100B
Trypsin-EDTA 0.05% Fisher Scientific Cat# 25-300-120
Fetal bovine serum (FBS) Gemini Bio-Products Cat# 100-106
Dimethyl Sulfoxide (DMSO) Fisher Bioreagents Cat# BP231-100; CAS: 67-68-5
HEPES (1M) Thermo Fisher Scientific Cat# 15630080
Polybrene Sigma-Aldrich Cat# H9268; CAS: 28728-55-4
StemSpan SFEM medium STEMCELL Technologies Cat# 09650
UltraPure 0.5M EDTA, pH 8.0 Invitrogen Cat# 15575020
Cell-Tak Cell and Tissue Adhesive Corning Cat# 354240
Seahorse XF RPMI Medium, pH 7.4 Agilent Technologies Cat# 103576-100
Glucose Solution Gibco Cat# A2494001
Sodium bicarbonate Sigma-Aldrich Cat# S5761-500G; CAS: 144-55-8

Critical commercial assays

CD34 MicroBead Kit, human Miltenyi Biotec Cat# 130-046-702
Seahorse XF Glycolytic Rate Assay Kit Agilent Technologies Cat# 103344-100
Bio-Rad Protein (Bradford) Assay Dye Reagent Bio-Rad Cat# 5000006
Seahorse XFe96 FluxPak mini Agilent Technologies Cat# 102601-100

Experimental models: Cell lines

293T ATCC (CRL-3216); RRID:CVCL_0063

Recombinant DNA

pMD2.G A gift from Dr. Didier Trono Addgene plasmid # 12259;
RRID: Addgene_12259
pMDLg/pRRE (Dull et al., 1998) Addgene plasmid # 12251;
RRID: Addgene_12251
pRSV-Rev (Dull et al., 1998) Addgene plasmid # 12253;
RRID: Addgene_12253
pLKO.1-shNS (Stewart et al., 2003) Addgene plasmid # 8453
pLKO.1-shFTO-1 Sigma-Aldrich TRCN0000246247
pLKO.1-shFTO-2 Sigma-Aldrich TRCN0000246249

Software and algorithms

GraphPad Prism GraphPad https://www.graphpad.com/scientific-software/prism/
Seahorse Wave Agilent Technologies https://www.agilent.com/en/product/cell-analysis/real-time-cell-metabolic-analysis/xf-software/seahorse-wave-desktop-software-740897
Seahorse XF Glycolytic Rate Assay Report Generators Agilent Technologies https://www.agilent.com/en/product/cell-analysis/real-time-cell-metabolic-analysis/xf-software/seahorse-xf-glycolytic-rate-assay-report-generators-740900
FlowJo v10 BD Life Sciences https://www.flowjo.com/

Other

Falcon polystyrene microplates, non-treated Corning Cat# 351146
Seahorse XFe96 Analyzer Agilent Technologies n/a
Eppendorf Research plus 8-channel adjustable volume pipette, 30–300 μL Eppendorf Cat# 3125000052
Eppendorf Research plus 8-channel adjustable volume pipette, 10–100 μL Eppendorf Cat# 3125000036
Matrix Reagent Reservoirs Thermo Scientific Cat# 8094