Table 10.
List of target gene sequences for strain-specific primer design
| Strain/primer pair | Target strain collection number | Taxonomy ID | Reference sequence | Target gene locus tag |
|---|---|---|---|---|
| AM | Akkermansia muciniphila ATCC BAA-835 | NCBI:txid349741 | NC_010655 | Amuc_1599 |
| BC | Bacteroides caccae ATCC 43185 | NCBI:txid411901 | NZ_AAVM02000002 | BACCAC_01370 |
| BI | Barnesiella intestinihominis YIT 11860 | NCBI:txid742726 | ADLE01000001 | HMPREF9448_00112 |
| BO | Bacteroides ovatus ATCC 8483 | NCBI:txid411476 | NZ_AAXF02000051 | BACOVA_03510 |
| BT | Bacteroides thetaiotaomicron VPI-5482 | NCBI:txid226186 | NC_004663 | BT4272 |
| BU | Bacteroides uniformis ATCC 8492 | NCBI:txid411479 | NZ_AAYH02000049 | BACUNI_04564 |
| CA | Collinsella aerofaciens ATCC 25986 | NCBI:txid411903 | NZ_AAVN02000001 | COLAER_00143 |
| CS | Clostridium symbiosum ATCC 14940 | NCBI:txid411472 | CLOSYM-1.0_Cont1178.4 | CLOSYM_03515 |
| DP | Desulfovibrio piger ATCC 29098 | NCBI:txid411464 | NZ_ABXU01000029 | DESPIG_01169 |
| EC | Escherichia coli HS | NCBI:txid331112 | NC_009800 | EcHS_A1069 |
| ER | Eubacterium rectale DSM 17629 | NCBI:txid657318 | FP929042 | EUR_02900 |
| FP | Faecalibacterium prausnitzii A2-165 | NCBI:txid411483 | NZ_ACOP02000003 | FAEPRAA2165_00192 |
| MF | Marvinbryantia formatexigens DSM 14469 | NCBI:txid478749 | NZ_ACCL01000097 | BRYFOR_02731 |
| RI | Roseburia intestinalis L1-82 | NCBI:txid536231 | NZ_ABYJ01000040 | ROSINTL182_00420 |