Table 1.
The sample sizes of WGS, ATAC-seq and RNA-seq from TCGA
| Cancer types | Abbreviation | WGS | ATAC-seq | RNA-seq |
|---|---|---|---|---|
| Adrenal gland | ACC | 9 | ||
| Bladder urothelial carcinoma | BLCA | 23 | 10 | 23 |
| Breast adenocarcinoma | BRCA | 99 | 74 | 98 |
| Cervical squamous cell carcinoma and endocervical adenocarcinoma | CESC | 20 | 2 | 20 |
| Cholangiocarcinoma | CHOL | 5 | ||
| Colon and rectal adenocarcinoma | COAD, READ | 65 | 38 | 61 |
| Esophageal carcinoma | ESCA | 18 | ||
| Glioblastoma multiforme | GBM | 52 | 9 | 34 |
| Head and neck squamous cell carcinoma | HNSC | 50 | 9 | 49 |
| Kidney chromophobe | KICH | 49 | 49 | |
| Kidney renal clear cell carcinoma | KIRC | 41 | 16 | 41 |
| Kidney renal papillary cell carcinoma | KIRP | 36 | 34 | 33 |
| Lower grade glioma | LGG | 19 | 13 | 19 |
| Liver hepatocellular carcinoma | LIHC | 54 | 17 | 52 |
| Lung adenocarcinoma | LUAD | 50 | 22 | 49 |
| Lung squamous cell carcinoma | LUSC | 50 | 16 | 48 |
| Mesothelioma | MESO | 7 | 0 | |
| Ovarian serous cystadenocarcinoma | OV | 50 | 24 | |
| Pheochromocytoma and paraganglioma | PCPG | 9 | ||
| Prostate adenocarcinoma | PRAD | 20 | 26 | 20 |
| Sarcoma | SARC | 34 | 34 | |
| Skin cutaneous melanoma | SKCM | 38 | 13 | 38 |
| Stomach adenocarcinoma | STAD | 40 | 21 | 35 |
| Testicular germ cell tumor | TGCT | 9 | ||
| Thyroid carcinoma | THCA | 50 | 14 | 48 |
| Uterine corpus endometrial carcinoma | UCEC | 51 | 13 | 50 |