Table 3.
Confirmation of the deleterious nsSNPs by other prediction software.
AAS | LRT | Mutation Taster | Mutation Assessor | PROVEAN | FATHMM | VEST3 | MetaLR | M-CAP | CADD | DANN | FATHMM-MKK | PhD-SNP | PANTHER | SNP-GO | SNAP2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
G330E | D | D | H | D | D | D | D | D | D | D | D | D | D | D | E |
C102S | D | D | M | D | D | D | D | D | D | D | D | D | D | D | E |
C174R | D | D | H | D | D | D | D | D | D | D | D | D | D | D | E |
G107D | D | D | L | D | D | D | D | D | D | D | D | D | D | D | E |
R125W | D | D | L | D | D | T | D | D | D | D | D | D | D | N | E |
G327R | D | D | H | D | D | D | D | D | D | D | D | N | D | N | E |
P290L | D | D | M | D | T | D | D | D | D | D | D | N | D | N | E |
K355T | D | D | M | N | D | D | D | D | D | D | D | D | D | N | E |
Q353R | D | D | M | N | D | D | D | D | D | D | D | D | D | N | E |
D336N | D | D | M | N | D | T | D | D | D | D | D | D | D | N | E |
T153N | D | D | M | N | D | T | D | D | D | D | D | D | D | N | E |
C75S | D | D | L | D | D | D | D | D | D | T | D | N | D | N | E |
P87S | D | D | L | N | D | D | D | D | D | D | D | D | D | N | E |
T144M | D | D | L | N | D | D | D | D | D | D | D | N | D | N | E |
R118L | D | D | L | D | D | D | T | D | D | D | D | D | D | N | E |
D397Y | N | D | M | D | D | T | D | D | D | T | D | D | D | N | E |
R301W | D | D | M | D | T | D | T | D | D | D | D | N | D | N | E |
P249S | D | D | M | N | T | T | D | D | D | D | D | N | D | N | N |
D41E | D | P | L | N | D | T | T | D | D | T | D | D | D | N | N |
S19N | N | P | L | N | D | T | D | D | D | D | D | N | D | N | N |
R167W | N | D | L | N | D | T | D | D | D | D | D | N | N | N | E |
A96G | D | D | L | N | T | D | T | D | D | D | D | N | D | N | N |
P181S | N | D | L | N | T | D | T | D | D | T | D | N | N | N | N |
D: deleterious; T: tolerated; U: unknown; L: low; N: neutral; M: medium; P: polymorphism; E: effect. Thresholds for all these predication tools are given in the S4 fill.