. 2021 Jun 18;16(6):e0247736. doi: 10.1371/journal.pone.0247736

Table 2. Genes presented in chloroplast genomes of Stemona sessilifolia, Asparagus officinalis and Carludovica palmata.

Category for genes	Group of genes	Name of genes
Ribosome RNA genes	rRNA genes	rrn16S^a, rrn23S^a, rrn5S^a, rrn4.5S^a
Transfer RNA genes	tRNA genes	trnT-UGU, trnR-ACG^a, trnT-GGU, trnS-UGA, trnfM-CAU, trnF-GAA, trnL-UAG, trnV-UAC, trnL-CAA^a, trnM-CAU, trnG-GCC, trnQ-UUG, trnA-UGC^a, , trnD-GUC, trnP-UGG, trnI-CAU^a, trnE-UUC, trnL-UAA, trnK-UUU, trnW-CCA, trnY-GUA, trnI-GAU^a,, trnG-UCC, trnS-GGA, trnR-UCU, trnH-GUG^a, trnS-GCU, trnN-GUU^a, trnV-GAC^a, trn*C-GCA
Others	Large subunit of ribosome	rpl14, rpl16, rpl2^a,, rpl20, rpl22^a, rpl23^a, rpl32, rpl33, rpl36
	Small subunit of ribosome	rps11, rps12^a,b,, rps14, rps15, rps16, rps18, rps19^a, rps2, rps3, rps4, rps7^a, rps8
	DNA dependent RNA polymerase	rpoA, rpoB, rpoC1, rpo*C2
	Subunits of NADH dehydrogenase	ndhA, ndhB^a,, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK
	Subunits of cytochrome b/f complex	petA, petB, petD, petG, petL, petN
	Subunits of photosystem I	psaA, psaB, psaC, psaI, psaJ
	Subunits of photosystem II	psbA, psbB, psbC, psbD, psbE, psbF, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3
	Large subunit of rubisco	rbcL
	Subunits of ATP synthase	atpA, atpB, atpE, atpF, atpH, atp*I
	Subunit of Acetyl-CoA-carboxylase	accD
	C-type cytochrome synthesis gene	ccsA
	Envelope membrane protein	cemA
	Protease	clpP**
	Translational initiation factor	infA
	Maturase	matK
	Conserved open reading frames	ycf1, ycf2^a, **ycf15***, ycf*4
	Pseudogenes	ycf1^ψ, ndhF^ψ, infA^ψ, ycf15 ^a,ψ, ycf68 ^a,ψ

*Gene with one intron

**Gene with two introns, a Gene with two copies, b Trans-splicing gene, ψ Pseudo gene. Genes in Bold font were only identified in S. sessilifolia and A. officinalis.Genes with underline were only identified in A. officinalis.