Table 4.
Genotyping of SARS-CoV-2 genome sequence variations of 17 virus samples from Sari collected between December 21, 2020 and January 19, 2021 (Month 10)x.
| Sequence variation |
14408C>T (RdRp: p.Pro312Leu) |
22189_22191delTAT (S: p.Ile210del) |
22992G>A (S: p.Ser477Asn) |
23403A>G (S: p.Asp614Gly) |
25563G>T (ORF3a: p.Gln57His) |
28688T>C (N: p.Leu139Phe) |
28835T>C (N: p.Ser188Pro) |
28854C>T (N: p.Ser194Leu) |
28881G>A (N: p.Arg203Lys) |
28882G>A (N: p.Arg203Arg) |
28883G>C (N: p.Gly204Arg) |
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Associated haplotype*/Virus strain** |
H1/G |
H1/G |
H1b/GH |
H5 |
H5 linked |
H1b linked |
H1a/GR |
H1a/GR |
H1a/GR |
|||
| Variation ID | V1 | V2 | V3 | V4 | V5 | V6 | V7 | V8 | V9 | V10 | V11 | |
| Genome type# | No. Of samples | |||||||||||
| H1b | 1 | + | . | + | + | . | . | . | . | . | . | |
| B or C | 2 | + | . | + | + | . | . | + | . | . | . | |
| D | 5 | + | . | + | . | + | + | . | . | . | . | |
| F | 1 | + | + | + | . | . | . | . | + | + | + | |
| J | 5 | + | . | + | + | + | + | . | . | . | . | |
| Samples proposed to be infected with two viruses | ||||||||||||
| A and D | 3 | + | . | + | . | T/C | T/C | . | G/A | G/A | G/C | |
X, Summary of data presented in Table S2; *, Haplotypes described in Safari et al, (2021a); **, virus strains described in GISAID; #, each type refers to a genome with a unique combination of sequence variations. +: variant sequence:., reference sequence, empty cell: not sequenced.