Reactive microglia are primed for phagocytosis in the areas with high density of Aβ aggregates in aged 5XFAD mice.A–C, coimmunostaining for Aβ aggregates (6E10 antibody, red), reactive microglia (anti-Iba1 antibody, green), and nuclei (DAPI, blue) (A), or Aβ aggregates (6E10 antibody, red), reactive microglia (anti-Iba1 antibody, green), and reactive astrocytes (anti-GFAP, Millipore, white) (B and C) of motor cortices of 10-month-old 5XFAD mice (A and B) or WT littermates (C). The dashed line in panel A separates areas with a high density of Aβ aggregates. D, heatmap analysis of the expression of genes that reports on reactive state of microglia and astrocytes in cortex (Ctx) and hippocampus (Hp) of 10-month-old 5XFAD mice (n = 6 mice) and WT littermates (n = 6 mice). Differential expression p-values were calculated with nCounter Advanced Analysis and are adjusted for false discovery rate (Benjamini–Yekutieli method), ∗p < 0.05, ∗∗∗p < 0.001, ∗∗∗∗p < 0.0001. E and F, coimmunostaining for HSV-1 (gD antibody, red), reactive microglia (anti-Iba1 antibody, green), and nuclei (DAPI, blue) in motor cortices of 10-month-old 5XFAD mice infected IC with 104 PFUs of McKrae and examined 24 h postinfection (n = 5 mice). E, and uninfected age-matched 5XFAD (n = 2 mice) (F).