Table 7.

Running time of different methods for simulated reads with 8× coverage on chromosomes 21 and 22

Method	Time (s)
	Minimap2	NGMLR	Find reads in fastQ	Unify outputs	SAM to BAM	Sniffles	SVIM	Remove redundancy	Total	Speed-up
Baseline method	163	–	–	–	47	27	–	–	233	0.24
NGMLR-Sniffles	–	1586	–	–	42	25	–	–	1653	1.68
Most sensitive method	163	1586	–	16	50	29	35	2	1881	1.91
SVNN	163	590	104	13	50	27	32	2	981	1