Table 1.
Profiling gene expression comparing organoids under OGD/R condition with non-treated organoids.
| Gene symbol | logFC | P-value | FDR | Stage |
|---|---|---|---|---|
| AFP | −5.05202426 | 6.61E-89 | 1.19E-83 | Down |
| TTR | −4.829589384 | 1.19E-37 | 7.09E-33 | Down |
| APOA2 | −4.375589058 | 1.38E-24 | 6.18E-20 | Down |
| ALB | −3.992565039 | 4.23E-24 | 1.52E-19 | Down |
| APOA1 | −4.544446565 | 1.37E-17 | 3.52E-13 | Down |
| RNA28SN4 | −1.909649871 | 2.98E-14 | 5.94E-10 | Down |
| APOC3 | −4.616288539 | 1.08E-09 | 1.76E-05 | Down |
| FTL | −0.803043639 | 2.06E-09 | 3.08E-05 | Down |
| AHSG | −3.975861808 | 5.40E-09 | 7.45E-05 | Down |
| FGG | −4.858272075 | 7.92E-09 | 0.0001015 | Down |
| FABP1 | −4.10691844 | 1.31E-07 | 0.00123622 | Down |
| MIR3615 | −1.070468786 | 1.86E-07 | 0.00167334 | Down |
| FGB | −4.756570983 | 2.98E-06 | 0.02353793 | Down |
| RNA45SN4 | −1.899507421 | 3.02E-06 | 0.02353793 | Down |
| FGA | −4.451593603 | 5.72E-06 | 0.04279685 | Down |
| TF | −4.591735052 | 2.10E-05 | 0.14485088 | Down |
| RBP4 | −4.460754954 | 4.01E-05 | 0.2567811 | Down |
| APOE | −2.151241972 | 4.23E-05 | 0.26168457 | Down |
| SELENOP | −2.776594398 | 4.92E-05 | 0.29458499 | Down |
| RN7SL2 | 1.271175267 | 0.0001831 | 0.88837764 | Down |
| MIR4709 | −1.029200022 | 0.0002927 | 1 | Down |
| APOB | −4.704983376 | 0.0004883 | 1 | Down |
| GPC3 | −1.985098838 | 0.0005083 | 1 | Down |
| ALDH1A1 | −4.546504241 | 0.0005188 | 1 | Down |
| YWHAE | 4.380630428 | 0.0005188 | 1 | Up |
| PTN | 0.775148705 | 0.0005895 | 1 | Up |
| s-rRNA | −0.5481881 | 0.0007606 | 1 | Down |
| PMEL | −4.567564523 | 0.0009766 | 1 | Down |
| NNAT | 0.610458501 | 0.0026105 | 1 | Up |
| RN7SL1 | 1.232302556 | 0.0038383 | 1 | Up |
| GSTA1 | −4.403571625 | 0.0039063 | 1 | Down |
| APOA4 | −4.361854192 | 0.0039063 | 1 | Down |
| POSTN | 0.705402287 | 0.0051026 | 1 | Up |
| SERPINA1 | −3.780463098 | 0.0063477 | 1 | Down |
| DNAJB1 | 1.887700371 | 0.0066108 | 1 | Up |
| RNA18SN5 | −2.370210664 | 0.0073853 | 1 | Down |
| MIR6132 | 1.736743211 | 0.0146333 | 1 | Up |
| LOC105379506 | 5.83933038 | 0.015625 | 1 | Up |
| RBP2 | −4.698155314 | 0.015625 | 1 | Down |
| DCT | −4.574216819 | 0.015625 | 1 | Down |
| AMBP | −3.45106874 | 0.0214844 | 1 | Down |
| VTN | −3.157212671 | 0.0214844 | 1 | Down |
| H19 | −3.053228094 | 0.0214844 | 1 | Down |
| PEA15 | 0.753258601 | 0.0238198 | 1 | Up |
| TUBA1A | 0.250293775 | 0.025046 | 1 | Up |
| MIR1244-1 | −0.274612882 | 0.0268679 | 1 | Down |
| SPINK1 | −4.120454121 | 0.03125 | 1 | Down |
| RPS6 | −0.293592327 | 0.0351882 | 1 | Down |
| MIR4442 | 0.351338228 | 0.0366267 | 1 | Up |
| HSPA8 | 0.404708278 | 0.0390529 | 1 | Up |
| MIR9-2 | 0.832371451 | 0.039617 | 1 | Up |
| TMSB10 | 0.247345492 | 0.0457451 | 1 | Up |