Table 1.
Predictive cutoff score and number of transcription start site for the corresponding genes
| Gene ID | Corresponding promoter region name | No. of TSS identified | Predictive score at cutoff value 0.8a | Distance from start codon (ATG) |
|---|---|---|---|---|
| 4097430 | Pro-atp6 | 3 | 0.82, 0.82, 0.95 | – 1450, – 453, – 445 |
| 4097429 | Pro-atp8 | 3 | 0.82, 0.82, 0.95 | – 1195, – 198, – 190 |
| 4097423 | Pro-atp9 | 6 | 0.89,0.88, 0.91, 0.96, 0.92, 0.89 | – 1859, – 1804, – 1705, – 1461, – 965, – 576 |
| 4097424 | Pro-cob | 1 | 0.84 | – 2290 |
| 4097425 | Pro-cox1 | 3 | 0.84, 0.85, 0.87 | – 1231, – 1159, – 431 |
| 4097419 | Pro-cox2 | 6 | 0.89, 0.88, 0.91, 0.96, 0.92, 0.89 | – 2192, – 2136, – 2038, – 1794, – 1,298, – 909 |
| 4097431 | Pro-cox3 | 9 | 0.97, 0.85, 0.92, 0.95, 0.99, 0.97, 0.89, 0.92, 0.92 | – 2425, – 2242, – 1804, – 1598, – 1421, – 1280, – 1198, – 1,045, – 340 |
| 4097426 | Pro-nad1 | 5 | 0.87, 0.81, 0.99, 0.91, 0.92 | – 2276, – 1667, – 1476, – 829, – 11 |
| 4097421 | Pro-nad2 | 5 | 0.96, 0.98, 0.96, 0.82, 0.80 | – 2,949, – 1916, – 1517, – 1405, – 1 230 |
| 4097422 | Pro-nad3 | 6 | 0.89, 0.88, 0.91, 0.96, 0.92, 0.89 | – 1310, – 1254, – 1156, – 912, – 416, – 27 |
| 4097428 | Pro-nad4 | 5 | 0.87, 0.81, 0.99, 0.91, 0.94 | – 3494, – 2885, – 2694, – 2047, – 1227 |
| 4097420 | Pro-nad4L | 6 | 0.89, 0.88, 0.91, 0.96, 0.92, 0.89 | – 3149, – 3093, 2995, – 2751, – 2255, – 1866 |
| 4097417 | Pro-nad5 | 1 | 0.84 | – 95 |
| 4097432 | Pro-nad6 | 12 | 0.97, 0.85, 0.92, 0.95, 0.99, 0.97, 0.89, 0.92, 0.92, 0.92, 0.83, 0.87 | – 3420, – 3237, – 2799, – 2593, – 2416, – 2275, – 2193, – 2,040, – 1,335, – 969, -717,-56 |
| 4097418 | Pro-rp3 | 4 | 0.93, 0.87, 0.90, 0.95 | – 1898, 1725, – 1301, – 983 |
aNNPP version 2.2 tool set was used with the minimum standard predictive promoter score with a default cut off value 0.8