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. 2021 Jun 22;2021:baab036. doi: 10.1093/database/baab036

Table 1.

Existing database and resources of PPI related to binding interfaces

Name Binding interface visualization Implemented methods Last update Availability URL
Interactome3D 3Dmol 2020 https://interactome3d.irbbarcelona.org/
Interactome INSIDER 3Dmol 2018 http://interactomeinsider.yulab.org/
KBDOCK (15) Jmol 2016 https://kbdock.loria.fr/index.php
3did (16) Flash 2020 https://3did.irbbarcelona.org/
Piface (17) JSmol 2013 http://prism.ccbb.ku.edu.tr/piface/
HotRegion (18) JSmol 2013 http://prism.ccbb.ku.edu.tr/hotregion/
InterEvol (19) PyMOL 2012 http://biodev.cea.fr/interevol/
PICCOLO (20) PyMOL 2011 http://www-cryst.bioc.cam.ac.uk/∼richard/piccolo/about.php
BioGRID (21) 2021 https://thebiogrid.org/
IntAct (22) 2021 https://www.ebi.ac.uk/intact/
BioPlex (23) 2020 http://bioplex.hms.harvard.edu/
HuRI (24) 2020 http://interactome.dfci.harvard.edu/H_sapiens/
IMEx (25) 2020 http://www.imexconsortium.org/
InWeb_InBioMap (26) 2020 https://www.intomics.com/inbio/map/
STRING (27) 2020 https://string-db.org/
HitPredict (28) 2020 http://hintdb.hgc.jp/htp/
PICKLE (29) 2020 http://www.pickle.gr/
HVIDB (30) 2020 http://zzdlab.com/hvidb/index.php
CPDB (31) 2019 http://10.life.nctu.edu.tw/cpdb/
InnateDB (32) 2019 http://www.innatedb.ca/
MatrixDB (33) 2019 http://matrixdb.univ-lyon1.fr/
CORUM (34) 2019 http://mips.helmholtz-muenchen.de/corum/
APID Interactomes (35) 2019 http://apid.dep.usal.es/
IID (36) 2018 http://ophid.utoronto.ca/iid
DIP (37) 2017 https://druginfo.nlm.nih.gov/drugportal/drugportal.jsp
TissueNet (38) 2016 http://netbio.bgu.ac.il/tissuenet/
HPIDB (39) 2016 http://hpidb.igbb.msstate.edu/main.html
PPIM (40) 2015 http://comp-sysbio.org/ppim/
PCDq (41) 2015 http://www.h-invitational.jp/hinv/pcdq/
CCSB Interactome Database (42) 2013 http://interactome.dfci.harvard.edu/
MINT (43) 2012 https://mint.bio.uniroma2.it/
Instruct 2012 http://instruct.yulab.org/
TRIP Database (44) 2012 http://www.trpchannel.org/
IDDI (45) 2012 http://pcode.kaist.ac.kr/iddi
DIMA (46) 2010 http://webclu.bio.wzw.tum.de/dima/index.jsp
ARNIE (47) 2010 http://www.sanger.ac.uk/resources/databases/arnie/
HDNetDB (48) 2017 http://hdnetdb.sysbiolab.eu/
PTIR (49) 2016 http://bdg.hfut.edu.cn/ptir/index.html
DD (50) 2012 http://www.deathdomain.org/
AtPIN (51) 2010 https://atpin.bioinfoguy.net/cgi-bin/atpin.pl
BIND (52) 2014 http://download.baderlab.org/BINDTranslation/