Table 1.
Year | Study country | Reference | Assay | N | PfK13 mutations frequency % [n] |
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
F446I | M476Ia | Y493Ha | R539Ta | I543Ta | P553L | R561Ha | P574L | C580Ya | A675V | |||||
2019 | Angola | Dimbu et al., 2021 | Sanger | 103 | ||||||||||
2014 | Benin | Ogouyèmi-Hounto et al., 2016 | Sanger | 78 | ||||||||||
2012–2016 | Botswana | Tawe et al., 2018 | Sanger | 127 | ||||||||||
2014–2017 | Cameroon | Moukoko et al. 2019 | Sanger | 175 | ||||||||||
2017–2019 | Central African Republic | Nzoumbou-Boko et al., 2020 | Sanger | 187 | ||||||||||
2015–2016 | Congo | Mayengue et al., 2018 | Sanger | 127 | ||||||||||
2017 | Democratic Republic of Congo | Yobi et al., 2020 | Sanger | 717 | ||||||||||
2013–2014 | Equatorial Guinea | Li et al., 2016 | Sanger | 98 | ||||||||||
2014–2017 | Eritrea | Pacheco et al., 2019 | Amp-Seq | 117 | ||||||||||
2014 | Ethiopia | Lo et al., 2017 | Sanger | 226 | ||||||||||
2017–2018 | Gabon | Adegbite et al., 2019 | Sanger | 100 | ||||||||||
2012–2014 | Gambia | Amambua-Ngwa et al., 2017 | Taq-man/Sanger | 184 | ||||||||||
2014–2017 | Ghana | Mensah et al. 2020 | MIPs | 619 | 0.2 [1] | |||||||||
2007–2016 | Ghana | Matrevi et al. (2019) | Sanger | 854 | 0.1 [1] | 0.1 [1] | 0.1 [1] | |||||||
2017–2018 | Ghana | Aninagyei et al. (2020) | WGS | 84 | 3.6 [3] | |||||||||
2016 | Guinea | Beavogui et al., 2020 | ND | 411 | ||||||||||
2016 | Guinea-Bissau | Nag et al., 2019 | Amp-seq | 97 | ||||||||||
2014–2019 | Kenya | Omedo et al.,. Unpublished data | Amp-Seq | 284 | ||||||||||
2014–2017 | Liberia | Pacheco et al., 2019 | Amp-Seq | 21 | ||||||||||
2015–2016 | Mali | Kone et al., 2020 | WGS | 216 | ||||||||||
2015–2017 | Mozambique | Gupta et al., 2020 | Sanger | 206 | ||||||||||
2013 | Niger | Laminou et al. 2017 | Sanger | 366 | ||||||||||
2014–2017 | Nigeria | Pacheco et al., 2019 | Amp-Seq | 29 | 3.4 [1] | |||||||||
2013–2015 | Rwanda | Uwimana et al. (2020) | Sanger | 466 | 4.1 [19] | 0.2 [1] | ||||||||
2014–2015 | Rwanda | Tacoli et al. 2016 | Sanger | 147 | 0.7 [1] | 0.7 [1] | 0.7 [1] | |||||||
2015–2019 | Senegal | Delandre et al. 2020 | Sanger | 327 | ||||||||||
2016–2017 | Somalia | Warsame et al. 2019 | Sanger | 138 | ||||||||||
2018 | South Africa | Raman et al. 2019 | Sanger | 532 | ||||||||||
2015–2017 | Sudan | Hussien et al., 2020 | Amp-Seq | 176 | ||||||||||
2019 | Tanzania | Bwire et al. (2020) | Amp-Seq | 422 | 0.2 [1] | |||||||||
2017 | Tanzania | Moser et al. (2020) | MIPs | 764 | 0.3 [2] | |||||||||
2012–2013 | Togo | Dorkenoo et al. 2016 | Sanger | 500 | ||||||||||
2012–2016 | Uganda | Conrad et al. 2019 | Sanger | 716 | 0.1 [1] | 0.1 [1] | ||||||||
2016–2017 | Uganda | Asua et al. 2020 | ND | 412 | 1.7 [7] | |||||||||
2014–2016 | Uganda | Ikeda et al., 2020 | ND | 194 | 0.5 [1] | |||||||||
2018–2019 | Uganda | Asua et al. (2020) | MIPs | 796 | 0.1 [1] | 5.5 [44] | ||||||||
2017 | Zambia | Sitali et al. 2020 | Sanger | 70 |
Represents validated SE Asian artemisinin resistance mutations. N is the number of samples that were successfully genotyped per study. n is the number of samples harbouring the respective mutation. ND = could not be determined. Assay represents the genotyping assay used in the respective study i.e. Sanger - Sanger sequencing, MIP - molecular inversion probes, WGS - whole-genome sequencing, Amp-Seq - amplicon sequencing. DR Congo stands for the Democratic Republic of Congo.