TABLE 3.

Summary of differential gene expression analyses among the sampled tissues.

	Neottia nidus-avis	Epipogium aphyllum
Stem vs. flower	9,109/4,644 down, 4,465 up	5,315/2,123 down, 3,192 up
Mycorrhiza vs. flower	13,701/6,465 down, 7,236 up	7,596/3,430 down, 4,166 up
Mycorrhiza vs. stem	11,360/4,866 down, 6,494 up	7,849/3,955 down, 3,894 up
Flower-specific	55	297
Stem-specific	508	175
Mycorrhiza-specific	5,788	4,048
Total	25,168 (57.92%)	16,851 (43.78%)