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. 2021 Jun 23;135:104591. doi: 10.1016/j.compbiomed.2021.104591

Table 2.

Interacting sites of RdRp (nsp12) involved in the interaction with viral RNA in the absence and presence of drugs as found by the computational approaches used in this study.

nsp12/RNA nsp12/RNA in the presence of drugs
IDX_184 Remdesivir Galidesivir Ribavirin

Position Residue Position Residue Position Residue Position Residue Position Residue

39 Asn 499 Asp 499 Asp 499 Asp 492 Gln
41 Lys 521 Tyr 521 Tyr 521 Tyr 499 Asp
78 Ser 814 Ser 814 Ser 814 Ser 521 Tyr
725 His 861 Ser 861 Ser 861 Ser 814 Ser
729 Glu 903 Tyr 903 Tyr 903 Tyr 861 Ser
733 Arg 903 Tyr
734 Asn

nsp12/RNA nsp12/RNA in the presence of drugs
Setrobuvir Sofosbuvir Tenofovir YAK

Position Residue Position Residue Position Residue Position Residue Position Residue

39 Asn 38 Tyr 499 Asp 499 Asp 499 Asp
41 Lys 40 Asp 521 Tyr 521 Tyr 521 Tyr
78 Ser 78 Ser 814 Ser 814 Ser 814 Ser
725 His 79 Asn 903 Tyr 861 Ser 861 Ser
729 Glu 220 Gly 903 Tyr 903 Tyr
733 Arg 722 Asn
734 Asn 734 Asn