Table 2.
Interacting sites of RdRp (nsp12) involved in the interaction with viral RNA in the absence and presence of drugs as found by the computational approaches used in this study.
nsp12/RNA | nsp12/RNA in the presence of drugs |
||||||||
IDX_184 | Remdesivir | Galidesivir | Ribavirin | ||||||
Position | Residue | Position | Residue | Position | Residue | Position | Residue | Position | Residue |
39 | Asn | 499 | Asp | 499 | Asp | 499 | Asp | 492 | Gln |
41 | Lys | 521 | Tyr | 521 | Tyr | 521 | Tyr | 499 | Asp |
78 | Ser | 814 | Ser | 814 | Ser | 814 | Ser | 521 | Tyr |
725 | His | 861 | Ser | 861 | Ser | 861 | Ser | 814 | Ser |
729 | Glu | 903 | Tyr | 903 | Tyr | 903 | Tyr | 861 | Ser |
733 | Arg | 903 | Tyr | ||||||
734 | Asn | ||||||||
nsp12/RNA | nsp12/RNA in the presence of drugs |
||||||||
Setrobuvir | Sofosbuvir | Tenofovir | YAK | ||||||
Position | Residue | Position | Residue | Position | Residue | Position | Residue | Position | Residue |
39 | Asn | 38 | Tyr | 499 | Asp | 499 | Asp | 499 | Asp |
41 | Lys | 40 | Asp | 521 | Tyr | 521 | Tyr | 521 | Tyr |
78 | Ser | 78 | Ser | 814 | Ser | 814 | Ser | 814 | Ser |
725 | His | 79 | Asn | 903 | Tyr | 861 | Ser | 861 | Ser |
729 | Glu | 220 | Gly | 903 | Tyr | 903 | Tyr | ||
733 | Arg | 722 | Asn | ||||||
734 | Asn | 734 | Asn |