Table 4.
Gene set name | NES | P.adjust | FDR |
---|---|---|---|
high expression | |||
GO_NEUTROPHIL_CHEMOTAXIS | 1.546 | 0.003 | 0.002 |
GO_MACROPHAGE_ACTIVATION | 1.547 | 0.003 | 0.002 |
GO_REGULATION_OF_DENDRITIC_CELL_DIFFERENTIATION | 1.595 | 0.012 | 0.009 |
GO_REGULATION_OF_MONONUCLEAR_CELL_MIGRATION | 1.542 | 0.003 | 0.002 |
GO_POSITIVE_REGULATION_OF_LEUKOCYTE_PROLIFERATION | 1.507 | 0.003 | 0.002 |
KEGG_CHEMOKINE_SIGNALING_PATHWAY | 1.394 | 0.004 | 0.004 |
KEGG_JAK_STAT_SIGNALING_PATHWAY | 1.328 | 0.007 | 0.006 |
KEGG_NOD_LIKE_RECEPTOR_SIGNALING_PATHWAY | 1.369 | 0.038 | 0.033 |
KEGG_NATURAL_KILLER_CELL_MEDIATED_CYTOTOXICITY | 1.435 | 0.004 | 0.004 |
KEGG_T_CELL_RECEPTOR_SIGNALING_PATHWAY | 1.442 | 0.004 | 0.004 |
low expression | |||
GO_GAMMA_AMINOBUTYRIC_ACID_SIGNALING_PATHWAY | −1.546 | 0.013 | 0.011 |
GO_NEUROTRANSMITTER_TRANSPORT | −1.611 | 0.004 | 0.004 |
GO_REGULATION_OF_NEURONAL_SYNAPTIC_PLASTICITY | −1.688 | 0.004 | 0.004 |
GO_GABA_GATED_CHLORIDE_ION_CHANNEL_ACTIVITY | −1.735 | 0.004 | 0.004 |
GO_VOLTAGE_GATED_CATION_CHANNEL_ACTIVITY | −1.698 | 0.004 | 0.004 |
KEGG_CALCIUM_SIGNALING_PATHWAY | −1.509 | 0.009 | 0.009 |
KEGG_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION | −1.644 | 0.009 | 0.009 |
NES: normalized enrichment score; P.adjust: adjust P value; FDR: false discovery rate
Gene sets with adjust p-value < 0.05 and FDR q-value < 0.05 are considered as significant