Table 2 |.
Troubleshooting table
| Step | Problem | Possible reason | Solution |
|---|---|---|---|
| 2–4 | 15N-labeling not detected | Inadequate label dose or delivery | Use controls to assess for absorption (urine) and/or incorporation into alternative cell types (WBCs) |
| Label is diluted away by ongoing proliferation during label free chase | Increase dose of 15N-thymidine labeling or decrease chase period | ||
| 27–40 | Indeterminate cell type in NanoSIMS images | Inadequate resolution or edge effect at margin of imaging field | Reanalyze with NanoSIMS at higher resolution and with centering of the histologic feature of interest in the imaging field |
| Cannot resolve mass peaks for the N isotopes | The MRP is not high enough | Iteratively adjust Q, LF4, HEX and incrementally use smaller entrance and aperture slits | |
| Insert the smallest exit slit (ExS 3) for the detector monitoring 15N | |||
| 36 | Long pre-sputtering time | Primary ion beam intensity is too low | Adjust the voltage (higher or lower) slightly on the L1 primary lens, in coordination with deflection plates C1x and C1y |
| Secondary ion intensity unstable | Sample is not flat and/or smooth | Inspect sample height with a microscope and readjust sample in NanoSIMS holder Apply a thicker gold coat |
|
| 55 | Cardiomyocytes in oblique axis for binucleation quantification | Review additional serial sections in the z-axis (sections are on glass slides) for a second nucleus | |
| 66 | Over- or undersaturation of photomicrographs | Decrease concentration of Hoechst staining or incubation time | |
| Adjust the strength of the excitation light, the sensitivity of the emission light detector, and the exposure time | |||