TABLE 3.

RNA-Seq clean reads and the counts, percentage of reads mapping statistics to Monascus purpureus genome.

	Sample	Raw reads	Clean reads	Clean bases	Q20 (%)	Q30 (%)	Total mapped	Uniquely mapped
Control	M7_1	48.97 Mb	48.00 Mb	7.17 Gb	98.27	95.03	46.22 Mb (96.31%)	46.04 Mb (95.92%)
	M7_2	58.01 Mb	57.19 Mb	8.54 Gb	98.43	95.36	55.33 Mb (96.75%)	55.10 Mb (96.34%)
	M7_3	51.15 Mb	50.38 Mb	7.55 Gb	98.29	95.00	48.88 Mb (97.02%)	48.67 Mb (96.60%)
Cocultured	M7_co_1	52.72 Mb	51.99 Mb	7.75 Gb	98.47	95.49	49.69 Mb (95.58%)	49.50 Mb (95.22%)
M. ruber M7	M7_co_2	57.00 Mb	56.08 Mb	8.37 Gb	98.44	95.42	53.85 Mb (96.02%)	53.65 Mb(95.65%)
transcriptome	M7_co_3	45.76 Mb	44.99 Mb	6.76 Gb	98.41	95.34	42.80 Mb (95.13%)	42.59 Mb (94.66%)

M7-monocultured M. ruber M7; M7_co-M. ruber M7 co-cultured with A. niger CBS 513.88.