TABLE 1.

Parameters of Prunus persica whole genome bisulfite sequencing and mapping of each sample and condition.

Sample	Sequence pairs analyzed	Uniquely mapped reads	Multiple mapped reads	Reads with no alignments	Genome coverage
Normal fruit at E1 R1	29,593,511	15,855,721	8,087,885	5,649,905	7X
Normal fruit at E1 R2	27,418,488	14,642,251	8,066,107	4,710,130	7X
Normal fruit at E1 R3	32,698,148	17,503,344	9,179,958	6,014,846	8X
Normal fruit at E3 R1	29,572,246	15,849,712	8,165,217	5,557,317	7X
Normal fruit at E3 R2	37,201,194	19,621,951	11,453,156	6,126,087	9X
Normal fruit at E3 R3	39,364,014	20,005,394	13,327,321	6,031,299	9X
Mealy fruit at E1 R1	30,242,762	15,788,636	8,575,159	5,878,967	7X
Mealy fruit at E1 R2	29,659,178	15,381,741	8,749,903	5,527,534	7X
Mealy fruit at E1 R3	32,770,016	15,350,153	11,278,650	6,141,213	7X
Mealy fruit at E3 R1	43,879,328	24,399,996	13,014,693	6,464,639	11X
Mealy fruit at E3 R2	36,227,923	19,872,745	10,317,302	6,037,876	9X
Mealy fruit at E3 R3	35,383,415	18,463,308	11,327,215	5,592,892	8X

From the total sequence pairs analyzed, the number of uniquely mapped reads, multiple mapped reads and reads with no alignment was obtained. Genome coverage was estimated using a genome size of 225.7 Mb and considering only the uniquely mapped reads. Three biological replicates (R1, R2, and R3) were considered as three independent fruits per condition.