Table 2.
Characterization and classification of individual pepper aquaporin (AQP) genes.
| No. | Gene Name | Locus ID | Subfamily | Subgroup | Position (Amino Acid Residues) | Chromosome/ Scaffold Location |
|||
|---|---|---|---|---|---|---|---|---|---|
| H2 (37) | H5 (143) | LE1 (152) | LE2 (158) | ||||||
| 1 | CaPIP1;1 | CA.PGAv.1.6.scaffold890.5 | PIP | PIP1 | F | H | T | R | chr02 |
| 2 | CaPIP1;2 | CA.PGAv.1.6.scaffold216.2 | PIP | PIP1 | F | H | T | R | chr10 |
| 3 | CaPIP1;3 | CA.PGAv.1.6.scaffold588.86 | PIP | PIP1 | F | H | T | R | PGAv.1.6.scaffold588 |
| 4 | CaPIP2;1 | CANN_MIP.chr06.1 | PIP | PIP2 | - | H | T | R | chr06 |
| 5 | CaPIP2;2 | CA.PGAv.1.6.scaffold920.3 | PIP | PIP2 | F | - | - | - | chr06 |
| 6 | CaPIP2;3 | CA.PGAv.1.6.scaffold888.8 | PIP | PIP2 | F | H | T | R | chr09 |
| 7 | CaPIP2;4 | CA.PGAv.1.6.scaffold888.7 | PIP | PIP2 | F | H | T | R | chr09 |
| 8 | CaPIP2;5 | CA.PGAv.1.6.scaffold888.6 | PIP | PIP2 | F | H | T | R | chr09 |
| 9 | CaPIP2;6 | CA.PGAv.1.6.scaffold1169.2 | PIP | PIP2 | F | H | T | R | chr10 |
| 10 | CaPIP2;7 | CA.PGAv.1.6.scaffold631.27 | PIP | PIP2 | F | H | T | R | chr11 |
| 11 | CaPIP3;1 | CA.PGAv.1.6.scaffold774.55 | PIP | PIP3 | F | H | T | R | chr01 |
| 12 | CaPIP3;2 | CA.PGAv.1.6.scaffold792.78 | PIP | PIP3 | F | H | T | R | chr01 |
| 13 | CaPIP3;3 | CA.PGAv.1.6.scaffold613.1 | PIP | PIP3 | L | Y | T | R | chr03 |
| 14 | CaPIP3;4 | CA.PGAv.1.6.scaffold1184.2 | PIP | PIP3 | F | H | T | R | chr05 |
| 15 | CaPIP3;5 | CA.PGAv.1.6.scaffold78.85 | PIP | PIP3 | F | H | T | R | chr08 |
| 16 | CaPIP3;6 | CA.PGAv.1.6.scaffold815.3 | PIP | PIP3 | F | H | T | R | chr12 |
| 17 | CaPIP3;7 | CA.PGAv.1.6.scaffold855.26 | PIP | PIP3 | F | H | T | R | PGAv.1.6.scaffold855 |
| 18 | CaPIP3;8 | CA.PGAv.1.6.scaffold855.28 | PIP | PIP3 | - | P | I | G | PGAv.1.6.scaffold855 |
| 19 | CaPIP3;9 | CANN_MIP.PGAv.1.6.scaffold855.1 | PIP | PIP3 | - | P | I | R | PGAv.1.6.scaffold855 |
| 20 | CaTIP1;1 | CA.PGAv.1.6.scaffold610.69 | TIP | TIP1 | H | I | A | R | chr11 |
| 21 | CaTIP2;1 | CA.PGAv.1.6.scaffold1058.46 | TIP | TIP2 | - | I | G | R | chr01 |
| 22 | CaTIP2;2 | CA.PGAv.1.6.scaffold48.31 | TIP | TIP2 | N | V | G | Y | chr03 |
| 23 | CaTIP2;3 | CA.PGAv.1.6.scaffold438.40 | TIP | TIP2 | H | I | G | R | chr03 |
| 24 | CaTIP2;4 | CA.PGAv.1.6.scaffold62.35 | TIP | TIP2 | H | I | G | R | chr06 |
| 25 | CaTIP2;5 | CA.PGAv.1.6.scaffold1152.13 | TIP | TIP2 | H | I | G | R | chr06 |
| 26 | CaTIP3;1 | CA.PGAv.1.6.scaffold861.16 | TIP | TIP3 | H | V | A | R | chr03 |
| 27 | CaTIP3;2 | CA.PGAv.1.6.scaffold65.60 | TIP | TIP3 | H | V | A | R | chr06 |
| 28 | CaTIP4;1 | CA.PGAv.1.6.scaffold298.3 | TIP | TIP4 | H | T | A | M | chr01 |
| 29 | CaTIP4;2 | CA.PGAv.1.6.scaffold298.4 | TIP | TIP4 | H | T | A | M | chr01 |
| 30 | CaTIP4;3 | CA.PGAv.1.6.scaffold298.5 | TIP | TIP4 | - | T | A | M | chr01 |
| 31 | CaTIP4;4 | CANN_MIP.chr01.3 | TIP | TIP4 | H | - | Q | F | chr01 |
| 32 | CaTIP4;5 | CA.PGAv.1.6.scaffold298.6 | TIP | TIP4 | M | V | Y | G | chr01 |
| 33 | CaTIP4;6 | CA.PGAv.1.6.scaffold777.2 | TIP | TIP4 | H | - | - | - | chr01 |
| 34 | CaTIP4;7 | CA.PGAv.1.6.scaffold777.1 | TIP | TIP4 | H | L | A | M | chr01 |
| 35 | CaTIP4;8 | CANN_MIP.chr01.1 | TIP | TIP4 | H | T | A | M | chr01 |
| 36 | CaTIP4;9 | CA.PGAv.1.6.scaffold1381.7 | TIP | TIP4 | H | N | A | M | chr01 |
| 37 | CaTIP4;10 | CA.PGAv.1.6.scaffold1432.12 | TIP | TIP4 | H | I | A | V | chr06 |
| 38 | CaTIP4;11 | CA.PGAv.1.6.scaffold394.19 | TIP | TIP4 | H | I | A | V | chr06 |
| 39 | CaTIP4;12 | CA.PGAv.1.6.scaffold467.1 | TIP | TIP4 | H | I | A | G | chr07 |
| 40 | CaTIP4;13 | CANN_MIP.chr01.2 | TIP | TIP4 | H | T | A | M | chr01 |
| 41 | CaTIP4;14 | CA.PGAv.1.6.scaffold488.29 | TIP | TIP4 | H | I | A | V | chr10 |
| 42 | CaTIP4;15 | CA.PGAv.1.6.scaffold820.9 | TIP | TIP4 | - | I | A | M | chr11 |
| 43 | CaTIP4;16 | CA.PGAv.1.6.scaffold420.10 | TIP | TIP4 | H | V | A | L | chr11 |
| 44 | CaTIP4;17 | CA.PGAv.1.6.scaffold1381.8 | TIP | TIP4 | H | T | A | M | chr01 |
| 45 | CaTIP4;18 | CA.PGAv.1.6.scaffold280.18 | TIP | TIP4 | H | I | A | M | chr11 |
| 46 | CaTIP4;19 | CA.PGAv.1.6.scaffold1381.9 | TIP | TIP4 | H | T | A | M | chr01 |
| 47 | CaTIP4;20 | CA.PGAv.1.6.scaffold963.13 | TIP | TIP4 | - | I | A | M | PGAv.1.6.scaffold963 |
| 48 | CaTIP4;21 | CA.PGAv.1.6.scaffold1331.1 | TIP | TIP4 | H | - | - | G | PGAv.1.6.scaffold1331 |
| 49 | CaTIP4;22 | CA.PGAv.1.6.scaffold298.1 | TIP | TIP4 | H | T | A | M | chr01 |
| 50 | CaTIP4;23 | CA.PGAv.1.6.scaffold298.2 | TIP | TIP4 | H | T | A | M | chr01 |
| 51 | CaNIP1;1 | CA.PGAv.1.6.scaffold38.2 | NIP | NIP1 | A | V | - | - | chr01 |
| 52 | CaNIP1;2 | CA.PGAv.1.6.scaffold792.10 | NIP | NIP1 | A | I | G | R | chr01 |
| 53 | CaNIP1;3 | CA.PGAv.1.6.scaffold407.53 | NIP | NIP1 | S | I | A | R | chr03 |
| 54 | CaNIP3;1 | CA.PGAv.1.6.scaffold1545.1 | NIP | NIP3 | W | V | A | R | chr02 |
| 55 | CaNIP3;2 | CA.PGAv.1.6.scaffold1067.9 | NIP | NIP3 | W | - | - | - | chr02 |
| 56 | CaNIP3;3 | CA.PGAv.1.6.scaffold411.30 | NIP | NIP3 | W | V | A | R | chr02 |
| 57 | CaNIP3;4 | CA.PGAv.1.6.scaffold411.29 | NIP | NIP3 | W | S | A | R | chr02 |
| 58 | CaNIP3;5 | CA.PGAv.1.6.scaffold625.87 | NIP | NIP3 | W | V | A | R | chr02 |
| 59 | CaNIP3;6 | CANN_MIP.chr03.1 | NIP | NIP3 | W | - | - | - | chr03 |
| 60 | CaNIP3;7 | CANN_MIP.chr05.1 | NIP | NIP3 | W | - | - | R | chr05 |
| 61 | CaNIP3;8 | CA.PGAv.1.6.scaffold65.202 | NIP | NIP3 | W | - | - | K | chr06 |
| 62 | CaNIP3;9 | CA.PGAv.1.6.scaffold65.203 | NIP | NIP3 | W | I | A | R | chr06 |
| 63 | CaNIP3;10 | CA.PGAv.1.6.scaffold1298.6 | NIP | NIP3 | - | V | A | R | chr11 |
| 64 | CaNIP3;11 | CANN_MIP.chr11.1 | NIP | NIP3 | W | D | S | S | chr11 |
| 65 | CaNIP3;12 | CA.PGAv.1.6.scaffold1122.2 | NIP | NIP3 | W | A | - | K | chr12 |
| 66 | CaNIP3;13 | CA.PGAv.1.6.scaffold1569.5 | NIP | NIP3 | W | V | A | R | PGAv.1.6.scaffold1569 |
| 67 | CaSIP1;1 | CANN_MIP.chr01.4 | SIP | SIP1 | - | - | S | S | chr01 |
| 68 | CaSIP1;2 | CA.PGAv.1.6.scaffold245.6 | SIP | SIP1 | I | - | G | S | chr01 |
| 69 | CaSIP1;3 | CA.PGAv.1.6.scaffold415.6 | SIP | SIP1 | I | - | P | N | chr03 |
| 70 | CaSIP1;4 | CANN_MIP.chr07.1 | SIP | SIP1 | - | - | - | - | chr07 |
| 71 | CaSIP1;5 | CA.PGAv.1.6.scaffold960.54 | SIP | SIP1 | L | - | P | N | PGAv.1.6.scaffold960 |
| 72 | CaXIP1;1 | CA.PGAv.1.6.scaffold564.27 | XIP | XIP1 | I | T | A | R | chr04 |
| 73 | CaXIP1;2 | CA.PGAv.1.6.scaffold588.13 | XIP | XIP1 | I | T | A | R | PGAv.1.6.scaffold588 |