ACE-2	angiotensin converting enzyme 2
ADP	adenosine diphosphate
ADSL1	adenylosuccinate lyase 1
ADSL2	adenylosuccinate lyase 2
ADSS	adenylosuccinate synthase
AICART	phosphoribosylaminoimidazolecarboxamide formyltransferase
AIRCr	Phosphoribosylaminoimidazole carboxylase
AMP	adenosine monophospate
ASPCTr	aspartate carbamoyltransferase
ATP	adenosine triphosphate
CBPS	carbamoyl-phosphate synthase
COMBINE	Computational Modeling in Biology Network
COVID-19	Coronavirus Disease 19
Csp	Copy number of structural proteins
DHORD9	dihydoorotic acid dehydrogenase
DHORTS	dihydroorotase
E	envelope
ERGIC	endoplasmic reticulum–Golgi intermediate compartment
FBA	flux balance analysis
fbc	flux balance constraints
FVA	flux variability analysis
GARFT	phosphoribosylglycinamide formyltransferase
GEM	genome-scale metabolic model
GISAID	Global Initiative on Sharing All Influenza Data
GK1	guanylate kinase 1
GLUPRT	glutamine phosphoribosyldiphosphate amidotransferase
hCOV	human coronavirus
hCoV-229E	human coronavirus 229E
ID	identifier
IMP	inosine monophosphate
IMPC	IMP cyclohydrolase
M	membrane
MERS	Middle East Respiratory Syndrome
Mv	viral molar mass
N	nucleocapsid
OMEX	Open Modeling EXchange format
OMPDC	orotidine-5’-phosphate decarboxylase
ORPT	orotate phosphoribosyltransferase
PPi	diphosphate
PRAGSr	phosphoribosylglycinamide synthase
PRAIS	phosphoribosylaminoimidazole synthase
PRASCS	phosphoribosylaminoimidazolesuccinocarboxamide synthase
PRFGS	phosphoribosylformylglycinamidine synthase
PRPPS	phosphoribosylpyrophosphate synthetase
RPI	ribose-5-phosphate isomerase
S	spike
SARS	Severe Acute Respiratory Syndrome
SARS-CoV-2	Severe Acute Respiratory Syndrome coronavirus type 2
SBML	Systems Biology Markup Language
TGEV	transmissible gastroenteritis virus
VBOF	viral biomass objective function
vRNP	viral ribonucleoprotein complexes
WT	wildtype