Table 1.
Detailed information for the transmission event, level and viral affiliation and diversity in the 23 sequenced samples. * indicates the sample sequenced in http://www.insaflu.insa.pt/covid19 as Portugal/PT1516/2020 (accessed on 12 November 2020).
| ID | Transmission Event | Transmission Level | Viral Sequence | |||||
|---|---|---|---|---|---|---|---|---|
| Factory | Family1 | Family2 | Clade | Other Non-Clade Basal Mutations (%) | ||||
| P1 | X | X | 0 | 20B | A3660G (93%) | T11194C (55%) | ||
| P35 | 0 | 20B | ||||||
| P36 | 1 (P35) | 20B | ||||||
| P37 | 2 (P36) | 20B | G4432T (99%) | |||||
| P2 * | X | X | 0 | 20A | G24077T | |||
| P12 | X | 1 (P2) | 20A | G24077T (100%) | ||||
| P13 | X | X | 1 (P2) | 20A | G24077T (100%) | |||
| P14 | X | X | 1 (P2) | 20A | G24077T (100%) | |||
| P15 | X | X | 1 (P2) | 20A | G24077T (100%) | T14418C (54%) | G26634T (100%) | |
| P16 | X | X | 1 (P2) | 20A | G24077T (100%) | C2062T (70%) | C6279A (65%) | |
| P17 | X | 1 (P2) | 20A | G24077T (86%) | ||||
| P21 | X | 1 (P2) | 20A | G24077T (100%) | ||||
| P22 | X | 1 (P2) or 2 (P13/P14) | 20A | G24077T (100%) | ||||
| P23 | X | 1 (P2) or 2 (P13/P14) | 20A | G24077T (100%) | ||||
| P24 | X | 1 (P2) | 20A | G24077T (100%) | C4456T (82%) | |||
| P25 | X | 1 (P2) | 20A | G24077T (98%) | ||||
| P26 | X | 1 (P2) | 20A | G24077T (100%) | ||||
| P28 | X | 2 (P15) | 20A | G24077T (100%) | G26634T (73%) | |||
| P29 | X | 2 (P4/P20) | 20A | G24077T (100%) | ||||
| P31 | 2 (P21) | 20A | G24077T (100%) | |||||
| P32 | 3 (P31) | 20A | G24077T (100%) | |||||
| P33 | 2 or 3 (P22) | 20A | G24077T (100%) | |||||
| P34 | 3 or 4 (P33) | 20A | G24077T (100%) | |||||