Table 1.
Summary of the sequence data generated from 16 RNA libraries through Illumina sequencing.
| Sample Name | Total Raw Reads (Millions) |
Total QC Reads (Millions) (Q > 20) |
Overall Read Mapping (%) |
|---|---|---|---|
| ICGV 91278 (C) | 65.12 | 64.11 | 94.90 |
| ICGV 91284 (C) | 62.03 | 58.89 | 94.80 |
| ICGV 91315 (C) | 65.42 | 63.76 | 94.80 |
| ICGV 91324 (C) | 60.15 | 58.79 | 94.40 |
| ICGV 93305 (C) | 55.24 | 53.00 | 94.20 |
| ICGV 94379 (C) | 82.69 | 80.57 | 94.30 |
| J 11 (C) | 44.60 | 42.62 | 94.80 |
| JL 24 (C) * | 57.92 | 56.55 | 94.20 |
| ICGV 91278 (I) | 58.17 | 56.52 | 94.20 |
| ICGV 91284 (I) | 60.47 | 58.71 | 93.90 |
| ICGV 91315 (I) | 76.38 | 73.46 | 94.30 |
| ICGV 91324 (I) | 58.63 | 56.95 | 94.40 |
| ICGV 93305 (I) | 61.50 | 59.63 | 94.40 |
| ICGV 94379 (I) | 55.80 | 54.31 | 94.10 |
| J 11 (I) | 54.94 | 52.38 | 94.40 |
| JL 24 (I) * | 52.58 | 51.67 | 89.90 |
| Total | 971.63 | 941.93 | - |
| Minimum | 44.60 | 42.62 | 89.90 |
| Maximum | 82.69 | 80.57 | 94.90 |
| Average | 60.73 | 58.87 | 94.13 |
C—Control condition; I—Infected condition; * Susceptible check.