Table 1.

Statically analysis of RNA-seq data.

Samples	Total Reads	Clean Reads	Mapped Reads	Unique Mapped Reads
12 h	53,979,100	26,989,550	283,660 (0.53%)	231,631 (0.43%)
12 h	82,859,646	41,429,823	393,276 (0.47%)	334,586 (0.40%)
12 h	100,333,768	50,166,884	399,024 (0.40%)	333,526 (0.33%)
24 h	79,795,198	39,897,599	3,202,980 (4.01%)	2,987,228 (3.74%)
24 h	72,608,382	36,304,191	3,455,298 (4.76%)	3,104,447 (4.28%)
48 h	88,036,166	44,018,083	6,783,005 (7.70%)	6,214,145 (7.06%)
48 h	72,301,850	36,150,925	6,423,924 (8.88%)	5,767,693 (7.98%)
48 h	74,999,418	37,499,709	5,774,290 (7.70%)	5,243,878 (6.99%)
F. graminearum	102,697,726	51,348,863	66,062,446 (64.33%)	58,398,509 (56.86%)
F. graminearum	101,416,397	50,176,223	64,173,223 (63.28%)	57,247,119 (56.48%)
F. graminearum	102,385,647	51,267,432	66,001,101 (64.46%)	58,266,178 (56.91%)

Notes: Samples, sample number of Baimaike analysis; Total reads, number of all single-end clean reads; Mapped reads, the number of the reads mapped to the reference genome and its percentage in total reads; Unique Mapped Reads: comparison of obtained total clean reads (%) and number of reads on the unique location of reference genome.