Table 1.
LSDV isolates from East Africa included in this study and previous isolates.
| No. | Strain Name | Host | Origin | Sample Type | Vaccination History | Year | Accession Number | |
|---|---|---|---|---|---|---|---|---|
| RPO30 | GPCR | |||||||
| 1 | * Marsabit/B291/2007 | Cattle | Kenya | Skin lesion | Non-vaccinated | 2007 | MK302092 | MK302070 |
| 2 | * Embu/B338/2011 | Cattle | Kenya | Skin lesion | Vaccinated | 2011 | MK302093 | MK302071 |
| 3 | * Bungoma/B624/2010 | Cattle | Kenya | Skin lesion | Non-vaccinated | 2010 | MK302094 | MK302072 |
| 4 | * Arsi/B1/2011 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2011 | MK302095 | MK302073 |
| 5 | * Asella/B2/2011 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2011 | MK302096 | MK302074 |
| 6 | * Ziway/B3/2011 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2011 | MK302097 | MK302075 |
| 7 | * Adama/B4/2011 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2011 | MK302098 | MK302076 |
| 8 | * Guder/B5/2008 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2008 | MK302099 | MK302077 |
| 9 | * Sodo/B22/2010 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2010 | MK302100 | MK302078 |
| 10 | * Humbo/B23/2010 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2010 | MK302101 | MK302079 |
| 11 | * Sodo/B24/2010 | Cattle | Ethiopia | Skin lesion | Non-vaccinated | 2010 | MK302102 | MK302080 |
| 12 | * Sundus/1970 | Cattle | Sudan | Skin lesion | Non-vaccinated | 1971 | MK302103 | MK302081 |
| 13 | * Sudan North/2008 | Cattle | Sudan | Skin lesion | Non-vaccinated | 2008 | MK302104 | MK302082 |
| 14 | * Sinnar/2006 | Cattle | Sudan | Skin lesion | Non-vaccinated | 2006 | MK302105 | MK302083 |
| 15 | * Toke/B6/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302106 | MK302084 |
| 16 | * Gindo/B7/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302107 | MK302085 |
| 17 | * Ambo/B8/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302108 | MK302086 |
| 18 | * Holeta/B9/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302109 | MK302087 |
| 19 | * Ginchi/B10/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302110 | MK302088 |
| 20 | * Chilimo/B11/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302111 | MK302089 |
| 21 | * Galesa/B12/2008 | Cattle | Ethiopia | Swab samples | Non-vaccinated | 2008 | MK302112 | MK302090 |
| 22 | * Massalamia/P04/1971 | Cattle | Sudan | Cell culture | Non-vaccinated | 1971 | MK302113 | MK302091 |
| 23 | Sudan/99-Atbara | Cattle | Sudan | 1999 | GU119944 | FJ869367 | ||
| 24 | Sudan/06-Obied | Cattle | Sudan | 2006 | GU119938 | FJ869369 | ||
| 25 | KSGP 0240 | Sheep | Kenya | 1976 | KX683219 | KX683219 | ||
| 26 | KS-1 | Sheep | Kenya | 1976 | KJ818290 | KJ818283 | ||
| 27 | NI-2490 | Cattle | Kenya | 1958 | AF325528 | AF325528 | ||
| 28 | Kenya | Cattle | Kenya | 1950 | MN072619 | MN072619 | ||
| 29 | Adama/B01/2011 | Cattle | Ethiopia | 2011 | KP663667 | KP663690 | ||
| 30 | Andassa/B04/2012 | Cattle | Ethiopia | 2012 | KP663671 | KP663694 | ||
| 31 | Kadjima/B01/2009 | Cattle | Ethiopia | 2009 | KP663681 | KP663704 | ||
| 32 | Mojo/B01/2011 | Cattle | Ethiopia | 2011 | KP663683 | KP663706 | ||
| 33 | Wenji/B01/2011 | Cattle | Ethiopia | 2011 | KP663687 | KP663710 | ||
* LSDV sequenced for this study.