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. 2021 Jun 8;13(6):1093. doi: 10.3390/v13061093

Figure 2.

Figure 2

Investigation of genome recombination. Bootscan analysis was performed using a sliding window of 400 nt by increments of 20 nt. (A) CV.10.115, (B) CV.10.126, and (C) Maximum likelihood (ML) tree was implemented for fragments measured when bootscan analysis was above 70% of permuted trees. ML implementing nucleotide substitution model GTR was generated from the alignment position 4000 to 4500, supporting the classification of sub-subtype A8 (in red). ALRT values were represented only if >0.90. Reference sequences GenBank accession number as follows: Ref.B-K03455,AY423387, AY173951, AY331295; Ref.C-U52953,U46016,AF067155,AY772699; Ref.D-K03454, AY253311, U88824; Ref.F1-AF077336, AF005494,AF075703AJ249238; Ref.F2-AJ249236,AJ249237,AF377956; Ref.G-AF084936, AF061641,U88826,AY612637; Ref.H-AF190127,AF190128,AF005496,FJ711703;Ref.J-EF614151,GU237072, AF082394; Ref.L-AF286236,AF457101, MN271384; Ref.K-AJ249239,MH705156,AJ249235; Ref.A1-DQ676872,AB253421, AB253429, AF004885,AB28737; Ref.A2-AF286238, GU201516,AF286237; Ref.A3-AY521630,AY521629,AY521631; Ref.A4-AM000053, AM000054, AM000055; Ref.26_A5U-FM877780, FM877777,FM877782,FM877781;Ref.A6-EF589043,JQ292897, MH330361,AF413987, KU749403;Ref.A7-KX389608,KX389622.