Table 1.
Candidate gene lists of identified Rsb selection regions for 5 lines of Korean native chickens.
| Comparison of Population | Candidate Gene (Excluded Unknown Gene) | Genes in High LD Region | QTL Name in High LD Region | |
|---|---|---|---|---|
| Layer | NG | ADGRL2/AHR/BANP/CACYBP/CADPS2/CD200/CHTOP/CNOT2/DOT1L/DPF3/DYNC1I1/ELF1/EPHA4/FBXW11/GRM8/HDAC9/HGFAC/HPCAL1/KCTD1/LOC112532947/MOB2/MYO18B/NARS2/OTUD7B/PAWR/PDE3A/PDLIM4/PDZRN3/PEBP1/PHF14/PLXNB2/POLA1/PPHLN1/RCOR1/RHOV/RNF216/RUNX1/SDHAF3/SLC15A4/SLC4A5/SNX13/TAOK3/UMAD1/UPK1B/USP15/WNT3A/YAP1 | UPK1B/IGSF11/DPF3/PPHLN1/PPHLN1/PRICKLE1 | Breast muscle pH |
| NL | AEBP2/ANAPC4/B3GAT1L/CAMK2G/CHAT/CNOT2/DDX10/DIAPH3/DSCAM/ELF1/GALNT7/GALNTL6/KCTD1/LSAMP/MAP4K4/MYBPC1/PDE3A/PDK3/PHF14/PLXNB2/POLA1/PTK2/QTRT2/RAP1B/RAPGEF5/SEPSECS/SLC36A4/SNX13/SRRM1/STIM2/TBC1D19/TDRD3/TMEM245/UPK1B/USP15/VWA8/WASL/WNT3A/ZMIZ1 | - | - | |
| NR | A4GNT/AGR2/ANKMY2/ANKRD28/BARX1/C1QTNF4/CELF1/CLASP1/CNTN5/CYP24A1/DIRC2/EP400/GALNTL6/GPR83/GRM8/IL1RAPL1/KAT2B/MAP4K4/MEOX2/MSRA/PAXIP1/PLXNB2/RAPGEF5/RPAP1/RYK/SDHAF3/SNX13/SPON1/STIM2/STK25/SYT10/TBC1D5/TOP2B/TSPAN7/USP25/WNT7A | - | - | |
| NW | ADCY9/AIFM3/ASB4/C22H2ORF42/CHN1/DDIAS/DPF3/DYNC1I1/EED/ELF1/EXT1/FSHR/GEMIN8/GPR158/HYAL6/IL1RAPL1/INO80/KIAA1217/LOC101751443/MCM5/ME3/MIPEP/MIR6672/NARS2/NOX4/OTUD7B/PDK3/POLA1/PRCP/RBFOX1/RGS6/SAT1/SDHAF3/SIPA1L1/SOSTDC1/STK3/SV2B/SYT1/TOP2B/TSPAN33/TSPAN7/TYRO3/UBE3B/UMAD1/USP15/VRK2/WDYHV1/YAP1/ZHX1/ZHX2 | SIPA1L1/SV2B/SDHAF3/NOX4 | Fear—tonic immobility duration, breast muscle pH, feather-crested head, pH of digestive tract contents, tibia length, dry matter intake, feed intake, albumen height | |
| NY | A1CF/AIFM3/AMBRA1/ANKRD33B/APPBP2/BRIP1/C22H2ORF42/CAMK2G/CERS6/CHN1/CREB3L1/CRIM1/DNAJC5/FBXW11/GALNTL6/GPR78/HTRA3/IGF2BP3/IL1RAPL1/KCTD1/KLHL41/LHX1/LRP2/LYPLAL1/MCM5/NEK6/PDE3A/PRPF6/RHOV/RNASEH2B/SERPINE3/SLC15A4/STIM2/STK3/TMEM132B/TTC3/VRK2/WASL/WDYHV1/ZFX/ZHX2 | - | - | |
| Broiler | NG | ACSBG2/AGRN/BMT2/CABIN1/CASTOR2/CNOT2/CNTN1/COMMD1/CUX1/DTNA/FARP2/FBXO42/GNA11/GPR132/HIF1A/INTS4/KCNC2/LOC112533299/MAP3K20/MIR6680/MOB1A/MOB2/MXD1/MYH10/NTSR1/OGFR/OTUD7B/P2RY8/PIAS4/PTPRF/PTPRT/PTTG1IP/RHOB/S100A6/SLCO4A1/TACR1/ZAP70/ZNF277 | CNTN1/NTSR1/MEF2D | Breast muscle pH, feed conversion ratio, comb weight, wattles weight, ileum weight |
| NL | ADIPOQ/ANAPC10/AUTS2/CDK8/CELF1/CNOT2/EFL1/GAB1/GAP43/GRID1/IGSF11/IL6/KCNC2/LMNB2/LOC112533299/LSAMP/MARCH2/MPRIP/MTFR1L/MYH10/PROM1/PTK2/PTP4A3/PTTG1IP/RUNX3/S1PR4/SLC10A7/SLC38A1/SNCG/SPON1/TDRD3/TTC32 | MEF2D/LMNB2/LONP1/SLC1A6/RANBP3/KLHL33/NDUFA11/BTN1A1 | Feed conversion ratio, cecal bacterial burden after challenge with Salmonella T, ileum weight, comb weight, wattles weight | |
| NR | A4GNT/ADD2/ALG10/ALKBH8/BICD1/C23H1ORF94/CABIN1/CELF1/CELSR1/CHMP4B/CPNE8/DMD/DVL1/FARP2/HDGFL1/IGSF3/IKZF2/LOC396098/LOC419409/MIR6680/MYH10/PTPRN2/PTTG1IP/RARB/SEMA5B/SINHCAF/SPDYA/TBC1D22A/TMTC1/TNRC6C/TOP1/TSPAN7 | HDGFL1/RRNAD1/CRABP2/LOC425431/BCAN/HAPLN2/RHBG/MEF2D | Feed conversion ratio, cecal bacterial burden after challenge with Salmonella T, ileum weight, comb weight, wattles weight | |
| NW | CABIN1/CHD2/CNOT2/DMD/EIF2S3/ERBB4/GABRB2/HNRNPDL/INTS4/JMJD1C/KCNC2/LOC101751443/LOC112533299/MIR6672/MYO7A/NTM/OFD1/OTUD7B/PAK1/PDK3/POLA1/PRKCD/SLC38A1/SPON1/ZAP70 | EIF2S3/APOO/MEF2D/POLA1/ERBB4/GABRB2/NTM/MIR1601 | Egg number, ovary weight, age at first egg, fear—tonic immobility duration, feed conversion ratio, feather pecking, testes weight | |
| NY | CDC42BPA/CEBPG/CHMP4B/COX10/DSCAM/EPHB2/FAM18B1/FGFRL1/IKBKE/JMJD1C/KCNJ9/KIF16B/MRGBP/MYH10/PROM1/PURG/RAB18L/RIC3/SNRPB2/SSH2/STX8/ULK2 | MEF2D | Feed conversion ratio, ileum weight, comb weight, wattles weight | |