Table 2.
Candidate gene lists of identical iHS selection regions for commercial and 5 lines of Korean native chickens.
| Comparison of Population | Chromosome | Candidate Gene | QTL Name in Shared Selective Sweep Region | |
|---|---|---|---|---|
| Layer | NG | 8, 9, 19 | ACSL3/DTX2/ENSGALG00000045942/ENSGALG00000037501/SSC4D/ENSGALG00000017358/ENSGALG00000001926/SRRM3/MDH2/TMEM120A/ENSGALG00000002053/TAF15 | Feathered feet, wattles weight, fecal egg count, feed intake, feather pecking, alternative complement activation by BRBC, feed conversion ratio |
| NL | 3, 6, 11, 12, 14, 15 | CUZD1/C10orf88/SFMBT1/LMF1/ENSGALG00000006648 | Abdominal fat percentage, breast muscle weight, age at sexual maturity, ovary weight, ovary percentage, breast muscle pH, feed intake, dry matter intake, jejunum weight, feathered feet, wattles length, body weight (36 days), body weight, ileum length, body temperature | |
| NR | 8, 11, 18 | ENSGALG00000005377 | Feathered feet, breast muscle pH, dry matter intake, jejunum weight, feed intake, body weight (hatch) | |
| NW | - | - | - | |
| NY | 2, 11, 14, 21, 22, 28 | ADGRB1/ENSGALG00000032326/LMF1/KIF1B/ENSGALG00000002797/ENSGALG00000024481/DFFA/PEX14/DOT1L | Wattles weight, breast muscle pH, feed intake, dry matter intake, jejunum weight, wattles length, body weight (36 days), body weight, gizzard weight, antibody titer to SRBC antigen, abdominal fat weight, breast muscle percentage, feather-crested head, gizzard percentage, eggshell color, small yellow follicle number, ovary weight, body weight (hatch) | |
| Broiler | NG | 7, 14, 24, 25 | SESTD1/ENSGALG00000004398 | Ovary weight, comb weight, body temperature, wattles length, breast muscle pH, fear—tonic immobility duration, feed conversion ratio, wattles weight |
| NL | - | - | - | |
| NR | 5 | RASGRP1/FAM98B | - | |
| NW | 1, 7, 14, 18, 24, 25 | ENSGALG00000001183/ENSGALG00000028706/ENSGALG00000024141/ENSGALG00000039987/ENSGALG00000028843/ENSGALG00000040425/ENSGALG00000045923/ENSGALG00000045397/ENSGALG00000037114/ENSGALG00000030308 | Breast muscle pH, ovary weight, comb weight, body weight (56 days), shank length, body temperature, wattles length, ileum weight, fear—tonic immobility duration, feed conversion ratio, wattles weight | |
| NY | 7, 10, 14, 27 | ENSGALG00000033329/ENSGALG00000007687/ENSGALG00000004398/WNT9B/ENSGALG00000001079/ENSGALG00000001055 | Ovary weight, comb weight, body temperature, wattles length, wattles weight, pH of digestive tract contents, egg production rate | |