| linc-RoR | long intergenic non-protein-coding RNA, regulator of reprogramming |
| TINCR | tissue differentiation-inducing non-protein-coding RNA |
| ANCR | Angelman syndrome chromosome region |
| PNKY | long intergenic non-protein-coding RNA |
| lincRNA-EPS | erythroid prosurvival lincRNA, also known as Ttc39aos1 |
| miscRNA | miscellaneous RNA |
| piRNA | piwi-interacting RNA |
| tRFs | tRNA-related RNA fragments |
| XIST | X-inactive specific transcript |
| MALAT1 | metastasis-associated lung adenocarcinoma transcript 1 |
| HOTAIR | HOX transcript antisense RNA |
| HOTTIP | HOXA transcript at the distal tip |
| NEAT2 | nuclear-enriched abundant transcript 2 |
| lincRNA-p21 | long intergenic non-coding RNA p21 |
| ANRIL | CDKN2B-AS1-CDKN2B antisense RNA 1 |
| Dios3os | DIO3 opposite strand upstream RNA |
| Emx2os | EMX2 opposite strand/antisense RNA |
| GAS5 | growth arrest-specific 5 |
| H19 | H19 imprinted maternally expressed transcript |
| HAR1B | highly accelerated region 1B |
| HULC | hepatocellular carcinoma up-regulated long non-coding RNA |
| Jpx | JPX transcript, XIST activator |
| MEG3/9 | maternally expressed 3/9 |
| ncR-uPAR | non-coding RNA upstream of the PAR-1 |
| NEAT1 | nuclear paraspeckle assembly transcript 1 |
| NRON | non-coding repressor of NFAT |
| RNCR3 | retinal non-coding RNA3 |
| SNHG1/SNHG6 | small nucleolar RNA host gene 1/6 |
| Tsix | XIST antisense RNA |
| UCA1 | urothelial cancer-associated 1 |
| Zfas1 | ZNFX1 antisense RNA 1 |
| EGOT | eosinophil granule ontogeny transcript |
| PRINS | psoriasis-associated non-protein-coding RNA induced by stress |
| TTTY14 | testis-specific transcript, Y-linked 14 |
| TTTY15 | testis-specific transcript, Y-linked 15 |
| CYTOR | cytoskeleton regulator RNA |
| lnc-IL17RA-11 | long, non-coding interleukin 17 receptor A-11 |