Antibodies |
Anti-DNA Polymerase theta antibody |
Abcam |
Cat#ab80906 |
Mouse anti-rabbit IgG-HRP |
Santa Cruz |
Cat#sc-2357 |
Bacterial and Virus Strains |
Rosetta 2(DE3)pLysS Competent Cells |
Millipore Sigma |
Cat#70956-3 |
Stellar Competent Cells |
Takara Bio |
Cat#636766 |
Chemicals, Peptides, and Recombinant Proteins |
Roche Deoxynucleoside Triphosphate Set |
Millipore Sigma |
Cat#11969064001 |
Sequel NE Reagent A |
American Bio |
Cat#AB13021-01000 |
Sequel NE Reagent B |
American Bio |
Cat#AB13022-01000 |
T4 PNK |
New England Biolabs |
Cat#M0201S |
γ-32P-ATP |
Perkin Elmer |
Cat#BLU502Z500UC |
Ni-NTA resin |
Qiagen |
Cat#30210 |
GE HiTrap Heparin column |
VWR |
Cat#95055-850 |
GE Superose 6 Increase 10/300 GL |
VWR |
Cat#10192-228 |
GE Superdex 200 10/300 GL |
VWR |
Discontinued. New Model: Cat#89497-272 |
TCEP solution |
Millipore Sigma |
Cat#646547 |
GenElute HP Select Plasmid Gigaprep Kit |
Millipore Sigma |
Cat#NA0800-1KT |
Polyethylenimine |
Polysciences |
Cat#23966 |
Gibco CD Hybridoma media |
ThermoFisher Biosciences |
Cat#11279023 |
Roche cOmplete Protease Inhibitor |
Millipore Sigma |
Cat#11873580001 |
Clarity ECL |
BioRad |
Cat#1705060 |
T4 Ligase |
New England Biolabs |
Cat#M0202S |
Deposited Data |
Crystal structure of pol QM1 |
Protein Data Bank |
PDBID#4X0P |
Experimental Models: Cell Lines |
Expi293F Cells |
ThernoFisher Scientific |
Cat#A14527 |
Oligonucleotides |
ss14AG |
Synthetic oligonucleotide |
5’-GCGGCTGTCATAAG |
ss14GC |
Synthetic oligonucleotide |
5’-GCGGCTGTCATACG |
Recombinant DNA |
Sumo3 PolQM1 |
Addgene |
Cat#78462 |
Software and Algorithms |
Bowtie2 |
Nature Methods. 2012, 9:357–359. |
N/A |
Pear |
Bioinformatics. 2014 Mar 1; 30(5): 614–620. |
N/A |
Bam-Readcount |
https://github.com/genome/bam-readcount |
N/A |