Table 1. The information of AcAUX, AcPIN, and AcPILS genes in pineapple.
| Genea | Accessionb | LG-positionc | No. of Intronsd | Gene lengthe (bp) | mRNAf (bp) | ORFg (bp) | Deduced polypeptideh | TMi | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Size (aa) | MW (Da) | pI | ||||||||
| AUXs group | ||||||||||
| AcAUX1 | Aco014099 | LG13:78227-85094 | 5 | 6,868 | 2,602 | 1,224 | 407 | 45,700.03 | 9.25 | 10 |
| AcAUX2 | Aco022810 | LG03:8616473-8623407 | 5 | 6,935 | 1,713 | 1,410 | 469 | 52,504.4 | 9.45 | 10 |
| AcAUX3 | Aco003213 | LG17:1138263-1142781 | 7 | 4,519 | 1,493 | 1,392 | 463 | 52,439.34 | 8.9 | 10 |
| PINs group | ||||||||||
| AcPIN1a | Aco002898 | LG06:12393626-12397352 | 5 | 3,727 | 2,310 | 1,878 | 625 | 67,537.25 | 9.65 | 8 |
| AcPIN1b | Aco024262 | LG13:3977710-3981298 | 5 | 3,589 | 2,066 | 1,794 | 597 | 64,144.22 | 8.97 | 8 |
| AcPIN2 | Aco006539 | LG14:1507943-1510999 | 5 | 3,057 | 2,194 | 1,917 | 638 | 68,237.94 | 9.53 | 9 |
| AcPIN5a | Aco017386 | LG01:23954851-23962237 | 3 | 7,387 | 1,229 | 381 | 126 | 13,174.96 | 7.94 | 4 |
| AcPIN5b | Aco026216 | LG01:24157625-24162499 | 4 | 4,875 | 1,226 | 1,056 | 351 | 38,839.28 | 9.31 | 7 |
| AcPIN5c | Aco004588 | LG05:4211250-4222127 | 7 | 10,878 | 1,871 | 1,704 | 567 | 6,0728.53 | 9.02 | 11 |
| AcPIN5d | Aco013144 | LG25:96868-97295 | 2 | 428 | 243 | 243 | 80 | 8,416.3 | 10.27 | 2 |
| AcPIN6 | Aco011298 | LG01:12633362-12636539 | 5 | 3,178 | 1,449 | 1,449 | 483 | 52,574.39 | 8.85 | 8 |
| AcPIN8 | Aco005710 | LG11:12351296-12353941 | 5 | 2,646 | 1,456 | 972 | 323 | 35,271.54 | 9.33 | 7 |
| AcPIN9a | Aco000614 | LG12:642277-644708 | 5 | 2,432 | 1,236 | 1,236 | 411 | 44,052.05 | 7.69 | 10 |
| AcPIN9b | Aco000616 | LG12:623550-627250 | 4 | 3,701 | 1,553 | 1,251 | 416 | 4,4325.19 | 9.23 | 10 |
| AcPIN10 | Aco005423 | LG11:10088855-10092754 | 5 | 3,900 | 2,492 | 1,926 | 641 | 67,686.46 | 6.66 | 9 |
| PILSs group | ||||||||||
| AcPILS1 | Aco000734 | LG02:17096147-17101044 | 9 | 4,898 | 1,815 | 1,293 | 430 | 46,267.91 | 8.85 | 10 |
| AcPILS2 | Aco012662 | LG05:13287842-13289194 | 0 | 1,353 | 1,353 | 1,353 | 450 | 48,990 | 5.70 | 10 |
| AcPILS5 | Aco011923 | LG03:13551090-13554622 | 10 | 3,533 | 1,955 | 1,668 | 555 | 61,947.56 | 8.28 | 10 |
| AcPILS6a | Aco011167 | LG04:13136639-13144201 | 10 | 7,563 | 2,011 | 1,251 | 416 | 45,010.88 | 9.17 | 10 |
| AcPILS6b | Aco024698 | LG21:4186817-4192853 | 11 | 6,037 | 1,842 | 1,296 | 431 | 48,019.06 | 8.91 | 7 |
| AcPILS6c | Aco007145 | LG23:1971977-1979952 | 9 | 7,976 | 2,088 | 1,254 | 417 | 45,758.67 | 8.68 | 9 |
| AcPILS7 | Aco009213 | LG22:8529151-8533050 | 9 | 3,900 | 1,927 | 1,281 | 426 | 46,197.27 | 5.99 | 8 |
Notes.
a
Systematic designation given to pineapple AcAUX, AcPIN, and AcPILS genes in this study.
b
Assension identity number of pineapple AcAUX, AcPIN, and AcPILS genes assigned by phytozome database.
c
The position of pineapple AcAUX, AcPIN, and AcPILS genes in linkage groups obtained from phytozome.
d
Number of introns in AcAUX, AcPIN, and AcPILS gene encoding region.
e
The genomic length of AcAUX, AcPIN, and AcPILS genes in pineapple.
f
The length of mRNA from AcAUX, AcPIN, and AcPILS genes.
g
The length of the open reading frame for AcAUX, AcPIN, and AcPILS genes.
h
Protein characterization of AcAUX, AcPIN, and AcPILSs obtained from phytozome.
i
The number of predicted transmembrane regions in AcAUX, AcPIN and AcPILS proteins from the TMHMM Server v2.0.
- LG
- linkage group
- mRNA
- message RNA
- ORF
- open reading frame
- bp
- base pair
- aa
- amino acids
- MW
- molecular weight
- pI
- isoelectric point
- TM
- transmembrane