Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2021 Jun 15;9(6):1299. doi: 10.3390/microorganisms9061299

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2021 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).

PMC Copyright notice

Comparative genome analysis of fecal E. coli strains isolated from patients with Crohn’s disease (CD) and healthy individuals. (a) Phylogenetic tree of 63 E. coli genomes and 18 MAGs (marked in bold) from healthy individuals (blue) and CD patients (red). Complete genomes of E. coli strains APEC O1, LF82, Sakai, EDL933, Nissle 1917, and K-12 substr. MG1655 were used as reference sequences (black). Phylogenetic groups by Clermont’s method [20] are highlighted on the inner ring. Sequence types (ST) by the Achtman’s scheme [49] and the Pasteur’s scheme [50] are marked as ST#1 and ST#2, respectively. Repeating STs are colored; (b) Multidimensional scaling (MDS) on average nucleotide identity (ANI) distance of all genomes is colored according to Clermont’s phylogroups.

Comparative genome analysis of fecal E. coli strains isolated from patients with Crohn’s disease (CD) and healthy individuals. (a) Phylogenetic tree of 63 E. coli genomes and 18 MAGs (marked in bold) from healthy individuals (blue) and CD patients (red). Complete genomes of E. coli strains APEC O1, LF82, Sakai, EDL933, Nissle 1917, and K-12 substr. MG1655 were used as reference sequences (black). Phylogenetic groups by Clermont’s method [20] are highlighted on the inner ring. Sequence types (ST) by the Achtman’s scheme [49] and the Pasteur’s scheme [50] are marked as ST#1 and ST#2, respectively. Repeating STs are colored; (b) Multidimensional scaling (MDS) on average nucleotide identity (ANI) distance of all genomes is colored according to Clermont’s phylogroups.