Table 2. Target proteins and aptamers obtained from PDB database, which were applied for our model.

Protein name	Protein PDB-ID	Aptamer ID	Proteins	Aptamers
GTPase KRas	6GOF	V1,V2,V9,D1	[48]	Our own experiments
Neurogenic locus notch homolog protein 1	3V79_1	CS1,…,CS7	[49]	Our own experiments
Coagulation factor X	5VOE(chain H and L)	5VOE:A	[43]	[43]
Endolysin, Beta-2 adrenergic receptor	3SN6_4	A1,A2,A13	[50]	[44]
Beta-2-adrenergic receptor/T4-lysozyme chimera	2RH1_1	A16	[51]	[44]
Extracellular regulated kinase 2	1ERK_1	C3,C3.59	[52]	[45]

Note that the information of aptamer-IDs is available in S1 Appendix.