Table 7.
The patterns extracted by most of the filters with a threshold as an average of all activations, which act as features to predict viral and non-viral genomes from human metagenomic datasets
| Viral pattern | Frequency | Repeated in no. of filters | Filter numbers | Non-viral pattern | Frequency | Repeated in no. of filters | Filter numbers |
|---|---|---|---|---|---|---|---|
| TAAAAAA | 3229 | 28 | 1-3,7-19,21-32 | ACACACA | 16110 | 27 | 6-32 |
| AAACAAA | 2783 | 23 | 7-29 | GAAAAAA | 8113 | 26 | 6-31 |
| TTAAAAA | 2036 | 20 | 1-20 | AAGAAAA | 4282 | 11 | 1-5, 7-12 |
| AAAAAAA∗ | 5915 | 32 | 1-32 | CACACAC | 11133 | 5 | 13-16,32 |
| AAAGAAA∗ | 3796 | 32 | 1-32 | TTTTTTT∗ | 13978 | 13 | 20-32 |
∗Neutral patterns, present in viral and non-viral genome sequences