Antibodies |
TotalSeq™-A0301 anti-mouse Hashtag 1 Antibody |
Biolegend |
Ca#155801 |
TotalSeq™-A0302 anti-mouse Hashtag 2 Antibody |
Biolegend |
Ca#155803 |
Ultra-LEAF™ Purified anti-mouse IFN-γ Antibody |
Biolegend |
Ca#505834 |
anti-mouse/human CD11b (M1/70) |
Biolegend |
Ca#101242 |
anti-mouse CD45 (30-F11) |
Biolegend |
Ca#103138 |
anti-mouse TCRβ (H57–597) |
Biolegend |
Ca#109224 |
anti-mouse NKp46 (29A1.4) |
Biolegend |
Ca#137612 |
anti-mouse PLZF (Mags.21F7) |
Thermofisher |
Ca#53-9320-82 |
anti-mouse T-bet (4B10) |
Thermofisher |
Ca#45-5825-82 |
anti-mouse RORγT (B2D) |
Thermofisher |
Ca#25-6981-82 |
anti-mouse E4BP4 (S2M-E19) |
Thermofisher |
Ca#12-5927-82 |
anti-mouse CD69 (FN50) |
Thermofisher |
Ca#25-0699-41 |
anti-mouse Nur77 (12.14) |
Thermofisher |
Ca#53-5965-82 |
anti-mouse TNF (MP6-XT22) |
Thermofisher |
Ca#25-7321-82 |
anti-mouse IL-17A (eBio17B7) |
Thermofisher |
Ca#45-7177-82 |
anti-mouse IFN-γ (XMG1.2) |
Thermofisher |
Ca#53-7311-82 |
anti-mouse IL-2 (JES6–5H4) |
Thermofisher |
Ca#25-7021-82 |
anti-mouse IL-10 (JES5–16E3) |
Thermofisher |
Ca#12-7101-41 |
anti-mouse IL-4 (11B11) |
Thermofisher |
Ca#25-7041-82 |
anti-mouse IL-13 (eBio13A) |
Thermofisher |
Ca#12-7133-82 |
anti-mouse F4/80 (BM8) |
Thermofisher |
Ca#17-4801-82 |
anti-mouse CD19 (ID3) |
Thermofisher |
Ca#47-0193-82 |
anti-mouse NK1.1 (PK136) |
Thermofisher |
Ca#25-5941-82 |
anti-mouse CD3e (500A2) |
Thermofisher |
Ca#HM3420 |
anti-mouse CD11c (N418) |
Thermofisher |
Ca#47-0114-82 |
anti-mouse CD301 (ER-MP23) |
Thermofisher |
Discontinued |
anti-mouse CD107a (eBio1D4B) |
Thermofisher |
Ca#12-1071-82 |
anti-mouse Granzyme B (NGZB) |
Thermofisher |
Ca#25-8898-82 |
anti-mouse CD4 (RM4–5) |
Thermofisher |
Ca#48-0042-82 |
anti-mouse CD8a (53–6.7) |
Thermofisher |
Ca#11-0081-82 |
anti-mouse ST2 (RMSST2–2) |
Thermofisher |
Ca#17-9335-82 |
anti-mouse Foxp3 (FJK-16s) |
Thermofisher |
Ca#11-5773-82 |
anti-mouse CD45.2 (104) |
Thermofisher |
Ca#45-0454-82 |
anti-mouse CD45.1 (A20) |
Thermofisher |
Ca#25-0453-82 |
anti-mouse Ki67 (SolA15) |
Thermofisher |
Ca#11-5698-82 |
anti-mouse Siglec-F (E50–2440) |
BD Biosciences |
Ca#565526 |
PE Mouse anti-XBP-1S |
BD Biosciences |
Ca#562642 |
|
Chemicals, Peptides, and Recombinant Proteins |
Alpha-galactosylceramide (KRN7000) |
Avanti |
Ca#867000 |
Recombinant murine IL-2 |
Peprotech |
Ca#212–12 |
Recombinant murine IL-7 |
Peprotech |
Ca#217–17 |
Palmitic acid |
Sigma |
Ca#P0500 |
4μ8c |
Sigma |
Ca#SML0949 |
Sodium phenylbutyrate |
Sigma |
Ca#SML0309 |
Tunicamycin |
Sigma |
Ca#T7765 |
Chloroform |
Sigma |
Ca#288306 |
Methanol |
Sigma |
Ca#34860 |
Monensin solution, 1000X |
Biolegend |
Ca#420701 |
CellTracker™ Green CMFDA Dye |
Thermofisher |
Ca#C2925 |
Annexin V |
Thermofisher |
Ca#88-8007-72 |
Brefeldin A |
Thermofisher |
Ca#00-4506-51 |
LipidTox Green |
Thermofisher |
Ca#H34475 |
Trizol Reagent |
Thermofisher |
Ca#15596026 |
FoxP3 staining kit |
Thermofisher |
Discontinued |
Cell stimulation cocktail |
Thermofisher |
Ca#00-4970-03 |
7AAD |
BD Biosciences |
Ca#559925 |
Cytofix/Cytoperm |
BD Biosciences |
Ca#554714 |
Collagenase Type 2 |
Worthington |
Ca#LS004176
|
ACK Lysing Buffer |
VWR |
Ca#10128–802 |
Ultrapure LPS, E. coli 0111:B4 |
InvivoGen |
Ca#tlrl-3pelps |
|
|
|
Critical Commercial Assays |
FAM-FLIVO Kit |
ImmunoChemistry Technologies |
Ca#980 |
BRDU Flow Kit |
BD BioSciences |
Ca#559619 |
RNeasy Mini Kit |
Qiagen |
Ca#74104 |
Brilliant III SYBR Green |
Agilent |
Ca#600883 |
|
|
|
Deposited Data |
Raw scRNAseq Data |
GEO |
GSE142845 |
Raw data (non-RNAseq) |
Mendeley Data |
doi: 10.17632/2d6ywgb8bj.1
|
|
|
|
Experimental Models: Cell Lines |
Primary murine iNKT cell line |
This paper |
N/A |
|
|
|
Experimental Models: Organisms/Strains |
Mouse: Vα14 TN |
Stephanie Dougan Lab (Clancy-Thompson, et al., 2018) |
N/A |
Mouse: CD1d1floxed |
Richard Blumberg Lab (Olszak, et al., 2014) |
N/A |
Mouse: B6.129S6-Tcra-Jtm1Tgi/J (Jα18 KO) |
Mark Exley Lab |
N/A |
Mouse: B6.129S6-Cd1d1/Cd1d2tm1Spb/J (CD1d KO) |
Mark Exley Lab |
N/A |
Mouse: C57BL/6J (WT) |
Jackson Laboratories |
Ca#000664 |
Mouse: B6.SJL-Ptprca Pepcb/BoyJ (CD45.1) |
Jackson Laboratories |
Ca#002014 |
Mouse: B6.129S7-Ifngtm1Ts/J (IFNγ KO) |
Jackson Laboratories |
Ca#002287 |
Mouse: B6.129S6-Il10tm1Flv/J (TIGER) |
Jackson Laboratories |
Ca#008379 |
Mouse: B6;FVB-Tg(Adipoq-cre)1Evdr/J (AdipoQ Cre) |
Jackson Laboratories |
Ca#010803 |
|
|
|
Oligonucleotides |
qPCR Primers (18s, Nfil3, Il10, Xbp1 total, Xbp1s, Hprt, Nos2, Il6, Arg1, Il13, Il4
|
Integrated DNA Technologies |
See Table S3
|
|
|
|
Software and Algorithms |
ImageJ |
ImageJ |
www.imagej.net |
Adiposoft package |
ImageJ |
www.imagej.net/Adiposoft |
FlowJo |
Treestar |
https://www.flowjo.com/ |
R |
The R Project for Statistical Computing |
www.r-project.org |
Graphpad Prism 6 |
Graphpad |
https://www.graphpad.com/scientific-software/prism/ |
Other |
Mouse PBS57:CD1d Tetramer |
NIH Tetramer Core Facility/Emory Vaccine Center |
N/A |
Standard Fat (Chow) Diet |
Pico Labs |
Ca#0007688 |
High Fat Diet (60% kcal) |
Research Diets, Inc |
Ca#D12492 |
Blood Glucose Meter |
McKesson |
Ca#960302 |
Blood Glucose Test Strips |
McKesson |
Ca#960298 |