Table 1.
Overview information of the Genomic Data Commons (GDC) pan-cancer dataset and the GSE109381 brain tumour methylation (BTM) dataset. The GDC dataset includes two cancer genome programmes: The Cancer Genome Atlas (TCGA) and Therapeutically Applicable Research to Generate Effective Treatment (TARGET).
| Dataset Info | GDC | BTM | ||
|---|---|---|---|---|
| Domain | Pan-cancer | Brain tumour | ||
| Tumour type | 33 (TCGA) + 3 (TARGET) + 1 (normal) | 86 + 8 (normal) | ||
| Additional label | Disease stage, primary site, gender, age, survival | Disease stage, gender, age | ||
| Omics type | Gene expression | DNA methylation | miRNA expression | DNA methylation |
| Feature number | 60,483 | 485,577 | 1881 | 485,577 |
| Sample number | 11,538 | 9736 | 11,020 | 3905 |