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. 2021 Jun 28;19(6):e06680. doi: 10.2903/j.efsa.2021.6680
Bacterial species/group Common infections Antibiotics used Relevant resistance tested
STAPHYLOCOCCI
S. aureus
S. pseudintermedius
S. schleiferi Skin infections
Otitis
Skin and soft tissue infections First choice (Hillier et al., 2014):
Clindamycin or lincomycin
Amoxicillin clav
1G cephalosporins
Sulfa/TMP
Second choice Second choice (Hillier et al., 2014): 
Doxycycline
3G cephalosporins
Fluoroquinolones
First choice (topical) (Jessen et al., 2019): 
Fusidic acid
Second choice (topical) (Jessen et al., 2019): 
Gentamicin
Fluoroquinolones
First choice (prophylaxis) (Jessen et al., 2019): 
Cefazolin Clindamycin/lincomycin
Methicillin
Methicillin
Sulfa/TMP
Doxycycline/tetracycline
Methicillin
Enrofloxacin/ciprofloxacin
Fusidic acid
Gentamicin
Enrofloxacin or ciprofloxacin
Methicillin
ENTEROBACTERIACEAE
Escherichia coliKlebsiella pneumoniaeProteus mirabilisEnterobacter spp. Urinary tract infections
Pyometra
Bacteraemia First choice (Jessen et al., 2019; Weese et al., 2019) 
Amoxicillin
Amoxicillin clav
Sulfa/TMP
Second choice (Jessen et al., 2019; Weese et al., 2019): 
Fluoroquinolones
Nitrofurantoin
3GCs
First choice (Jessen et al., 2019): 
Fluoroquinolones
Second choice (Jessen et al., 2019): 
Amoxicillin clav
First choice (Jessen et al., 2019): 
Fluoroquinolone + ampicillin Ampicillin/amoxicillin
Amoxicillin clav
Sulfa/TMP
Enrofloxacin/ciprofloxacin
Nitrofurantoin
Cefpodoxime, cefotaxime, ceftazidime or ceftriaxone
Enrofloxacin or ciprofloxacin
Amoxicillin clav
Enrofloxacin/ciprofloxacin
Ampicillin/amoxicillin
PSEUDOMONAS
P. aeruginosa Otitis
Wound infections First choice (Jessen et al., 2019): 
Polymyxin
Second choice (Jessen et al., 2019): 
Fluoroquinolones
Gentamicin Polymyxin/colistin
Enrofloxacin/ciprofloxacin
Gentamicin
ENTEROCOCCI
E. faecalisE. faecium Urinary tract infections
Bacteraemia First choice (Weese et al., 2019): 
Amoxicillin
First choice (Jessen et al., 2019): 
Ampicillin + fluoroquinolone Ampicillin/amoxicillin
Sulfa/TMP
Enrofloxacin/ciprofloxacin
Ampicillin/amoxicillin
Enrofloxacin/ciprofloxacin
CLOSTRIDIA
C. difficileC. perfringens Acute diarrhoea First choice (Jessen et al., 2019): 
Amoxicillin
Second choice: 
Metronidazole Ampicillin/amoxicillin
Metronidaxole