Table 2.
Unigenes upregulated with stage specific expression patterns in Tripidium inflorescence development
| Gene name | Unitig ID | E-valuex | % Idx | Fold Changey | FDR p-valuey | TPM Normalized Means | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| VM | 20P | 40P | 80P | 120P | 160P | 200P | ||||||
| Inflorescence meristems at 20 cm (20P) | ||||||||||||
| Mini zinc finger protein 1 | Trav0045635 | 6.1E−28 | 85.5 | 67.9 | 2.8E−3 | 1.7 | 106.9 | 16.1 | 59.7 | 1.6 | 3.1 | 2.9 |
| Dehydrodolichyl diphosphate synthase 2 | Trav0048752 | 3.3E−93 | 89.3 | 48.8 | 7.7E−3 | 0.7 | 35.0 | 1.2 | 20.1 | 0.7 | 1.5 | 1.7 |
| n/a | Trav0022235 | n/a | n/a | 48.7 | 3.1E−3 | 9.6 | 400.4 | 13.4 | 123.6 | 9.6 | 11.8 | 13.6 |
| Transcription factor TGA4 | Trav0031073 | 3.1E−123 | 87.8 | 23.1 | 8.6E−4 | 7.5 | 153.9 | 14.9 | 51.8 | 4.9 | 5.6 | 6.5 |
| n/a | Trav0012164 | n/a | n/a | 17.2 | 4.3E−3 | 28.2 | 424.0 | 21.5 | 120.0 | 8.9 | 16.4 | 17.6 |
| Inflorescence meristems at 40 cm (40P) | ||||||||||||
| n/a | Trav0005961 | n/a | n/a | 402.5 | 2.1E−6 | 0 | 8.5 | 52.7 | 29.3 | 28.7 | 26.4 | 19.8 |
| n/a | Trav0020850 | n/a | n/a | 203.4 | 2.1E−5 | 0 | 10.4 | 26.3 | 25.2 | 24.7 | 14.4 | 8.7 |
| Inflorescence meristems at 80 cm (80P) | ||||||||||||
| MADS-box trans. factor 34 | Trav0005828 | 4.2E−103 | 86.8 | 210.4 | 5.5E−5 | 0.2 | 2.7 | 2.2 | 68.2 | 144.2 | 168.5 | 180.8 |
| Inflorescence meristems at 120 cm (120P) | ||||||||||||
| n/a | Trav0000921 | n/a | n/a | 204.8 | 5.0E−2 | 2.1 | 7.5 | 0.7 | 4.7 | 367.0 | 752.9 | 1063.1 |
| Sucrose-phosphate synthase | Trav0002204 | 0 | 93.7 | 109.1 | 1.9E−6 | 0.8 | 7.0 | 4.4 | 12.1 | 35.4 | 91.2 | 146.0 |
| MADS-box trans. factor 7 | Trav0000111 | 3.6E−171 | 92.0 | 202.0 | 1.4E−3 | 0.5 | 1.1 | 0.3 | 10.0 | 101.9 | 171.3 | 233.0 |
| Inflorescence meristems at 160 cm (160P) | ||||||||||||
| n/a | Trav0012650 | n/a | n/a | 104.4 | 5.0E−6 | 0.7 | 5.2 | 3.2 | 7.6 | 25.4 | 69.5 | 60.4 |
| Carbonic anhydrase | Trav0005356 | 5.3E−58 | 96.6 | 152.0 | 4.0E−2 | 4.7 | 24.0 | 0.4 | 3.1 | 337.7 | 573.4 | 571.9 |
| Inflorescence meristems at 200 cm (200P) | ||||||||||||
| Arginine decarboxylase 2 | Trav0036107 | 0 | 81.2 | 1472.0 | 8.2E−3 | 0.1 | 0.9 | 0.1 | 0.3 | 41.1 | 213.8 | 294.0 |
| n/a | Trav0006980 | n/a | n/a | 487.1 | 1.1E− 3 | 2.2 | 3.0 | 1.8 | 2.7 | 183.0 | 677.9 | 959.9 |
| MADS-box trans. factor 8 | Trav0000081 | 4.5E−175 | 96.2 | 471.5 | 2.7E−6 | 0.6 | 1.5 | 0.5 | 10.2 | 107.0 | 218.1 | 300.9 |
| Protein unc-13 homolog | Trav0005596 | 0 | 90.2 | 104.5 | 5.0E−3 | 1.9 | 3.8 | 1.4 | 2.6 | 61.0 | 137.7 | 174.1 |
| MADS-box trans. factor 16 | Trav0000760 | 5.5E−27 | 83.7 | 87.3 | 2.8E−4 | 1.0 | 0.4 | 0.5 | 2.9 | 40.7 | 70.5 | 85.2 |
| MADS-box trans. factor 4 | Trav0000787 | 4.6E−76 | 98.3 | 40.2 | 7.0E−6 | 3.7 | 6.3 | 3.8 | 9.9 | 41.7 | 89.3 | 139.4 |
| Sister chromatid cohesion 1 protein 1 | Trav0023214 | 0 | 88.8 | 34.2 | 4.5E− 4 | 0.5 | 1.2 | 0.5 | 2.6 | 6.6 | 15.1 | 17.8 |
xE-value and % Id derived from BLAST and InterPro Scan results and annotated utilizing BLAST2GO default annotation rules
yFold change and FDR p-values are derived from EDGE tests between the vegetative control and inflorescence development stage of each underlined subsection within the table