Table 4.
Unigenes upregulated with stage specific expression patterns in Tripidium seed development
| Gene name | Unitig ID | E-valuex | % Idx | Fold Changey | FDR p-valuey | TPM Normalized Means | |||
|---|---|---|---|---|---|---|---|---|---|
| 200P | ANT | IS | MS | ||||||
| Mature seeds (MS) | |||||||||
| Globulin-1 S allele | Trav0051718 | 0 | 83.5 | 32,919.7 | 7.1E−7 | 0.4 | 1.4 | 7883.0 | 16,578.5 |
| Embryonic abundant protein 1 | Trav0073008 | 4.2E−41 | 95.7 | 23,575.7 | 5.8E−6 | 0.26 | 0.19 | 4424.2 | 9490.7 |
| Aquaporin TIP3–1 | Trav0101881 | 1.8E−130 | 94.0 | 14,828.8 | 8.4E−6 | 0.1 | 0.28 | 2266.5 | 3572.9 |
| Vicilin-like seed storage protein At2g28490 | Trav0121709 | 3.8E−87 | 87.7 | 9135.7 | 1.6E−5 | 0 | 0 | 628.7 | 1237.7 |
| n/a | Trav0084667 | n/a | n/a | 281.5 | 6.7E−16 | 0 | 0 | 0.2 | 40.1 |
| n/a | Trav0133404 | n/a | n/a | 276.5 | 1.4E−9 | 0 | 0 | 0 | 40.3 |
| Immature seeds (IS) | |||||||||
| Em-like protein GEA1 | Trav0097540 | 3.7E−49 | 87.0 | 21,364.3 | 1.5E−4 | 0 | 0 | 2616.3 | 4543.1 |
| Oleosin 16 kDa | Trav0094715 | 1.9E−45 | 77.2 | 7209.0 | 2.2E−5 | 0.1 | 0.2 | 1195.2 | 907.0 |
| n/a | Trav0099087 | n/a | n/a | 5148.0 | 9.4E−5 | 0 | 0 | 584.4 | 707.9 |
| Seed biotin-containing protein SBP65 | Trav0121829 | 1.7E−50 | 76.5 | 3075.0 | 9.0E−5 | 0 | 0 | 348.7 | 334.6 |
| Metal-assoc. isoprenylated plant protein 7 | Trav0143502 | 1.5E−55 | 77.0 | 2029.7 | 6.4E−4 | 0 | 0 | 230.2 | 244.4 |
| n/a | Trav0137461 | n/a | n/a | 1776.7 | 1.7E−4 | 0 | 0 | 201.9 | 212.6 |
| Globulin-2 | Trav0102378 | 7.8E−59 | 91.5 | 953.5 | 8.3E−5 | 0 | 0 | 109.6 | 96.3 |
| Cytochrome P450 99A2 | Trav0083879 | 0 | 78.5 | 842.3 | 3.7E−4 | 0 | 78.4 | 93.3 | 0.3 |
| Florets at anthesis (ANT) | |||||||||
| Berberine bridge enzyme-like 18 | Trav0097613 | 0 | 91.1 | 807.0 | 6.7E−6 | 0 | 100.3 | 36.4 | 0.3 |
| Xyloglucan endotransglucosylase/hydrolase 2 | Trav0071493 | 1.4E−74 | 77.7 | 790.4 | 7.8E−3 | 0 | 87.2 | 7.4 | 0.6 |
| n/a | Trav0083685 | n/a | n/a | 470.4 | 2.0E−3 | 0 | 47.1 | 2.8 | 0.7 |
| n/a | Trav0100871 | n/a | n/a | 418.9 | 4.9E−5 | 0 | 45.4 | 1.9 | 0 |
| Uncharacterized protein LOC8058288 | Trav0046122 | 0 | 72.6 | 363.8 | 2.5E−3 | 0.1 | 74.6 | 7.0 | 0.2 |
| n/a | Trav0081406 | n/a | n/a | 257.9 | 1.3E−4 | 0 | 26.3 | 1.1 | 0 |
| Ent-cassadiene C2-hydroxylase | Trav0106832 | 3.1E−24 | 80.5 | 186.9 | 0.01 | 0 | 21.2 | 24.0 | 0 |
xE-value and % Id derived from BLAST and InterPro Scan results and annotated utilizing BLAST2GO default annotation rules
yFold change and FDR p-values for each gene are derived from EDGE tests between inflorescence meristem samples at 200 cm of development and each underlined subsection within the table