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. Author manuscript; available in PMC: 2021 Jun 29.
Published in final edited form as: Nat Ecol Evol. 2020 Aug 24;4(11):1558–1566. doi: 10.1038/s41559-020-01284-0

Extended Data Fig. 1 |. Replication of archaic SNP depletion after sampling control SNPs in clusters.

Extended Data Fig. 1 |

This plot replicates the analysis from Fig. 1b using archaic SNPs and controls sampled to match the clustering induced by LD structure. The depletion of archaic SNPs from exon and enhancers is nearly identical to the depletion measured using controls not sampled to match the spatial clustering of introgressed SNPs.