TABLE 1.
Repetitive sequences in the DMD gene and intron 44 of the DMD gene.
| DMD | Intron 44 | Distal 100 kb of intron 44 | ||
| 31986632-32086631 | ||||
| Total length (bp) | 2262381 | 248401 | 100000 | |
| GC level | 36.42% | 36.17% | 36.84% | |
| Sequence types (length occupied) | ||||
| SINEs: | 8.83% | 7.14% | 8.93% | |
| ALUs | 6.10% | 3.87% | 5.39% | |
| MIRs | 2.70% | 3.26% | 3.54% | |
| LINEs: | 19.32% | 15.45% | 12.51% | |
| LINE1 | 14.00% | 7.76% | 4.24% | |
| LINE2 | 4.55% | 6.88% | 7.43% | |
| L3/CR1 | 0.59% | 0.60% | 0.40% | |
| LTR elements: | 7.06% | 5.44% | 7.37% | |
| ERVL | 1.77% | 1.40% | 1.09% | |
| ERVL-MaLRs | 2.99% | 2.71% | 4.16% | |
| ERV_class I | 2.12% | 1.23% | 2.12% | |
| ERV_class II | 0.00% | 0.00% | 0.00% | |
| DNA elements: | 4.45% | 4.13% | 5.54% | |
| hAT-Charlie | 2.18% | 3.07% | 4.26% | |
| TcMar-Tigger | 1.40% | 0.41% | 0.84% | |
| Total interspersed repeats: | 39.78% | 32.43% | 34.87% | |
| Simple repeats: | 1.33% | 1.23% | 1.35% | |
| Low complexity: | 0.20% | 0.11% | 0.09% |
DMD, Duchenne muscular dystrophy; SINEs, short interspersed elements; MIRs, mammalian-wide interspersed repeats; LINEs, long interspersed elements; LTR, long terminal repeat elements; DNA elements, DNA repeat elements.