Table 1.
Specificity and Sensitivity of the 8 Polymorphisms in B.1.1.7 for Strain Identification
Polymorphisma | Strain | Specificity/Sensitivity, %e | |||
---|---|---|---|---|---|
B.1.1.7b | B.1.1.28c | B.1.351d | WTd | ||
H69/V70 deletion | 98.73/100 | ||||
WT | 0 | 374 | 834 | 36 577 | |
Del | 26 328 | 0 | 0 | 470 | |
Y144 deletion | 99.87/100 | ||||
WT | 0 | 374 | 834 | 35 708 | |
Del | 26 328 | 0 | 0 | 46 | |
N501Y | 99.52/100 | ||||
A | 0 | 294 | 0 | 36 868 | |
U | 26 328 | 80 | 834 | 177 | |
A570D | 99.98/99.99 | ||||
C | 2 | 374 | 833 | 37 597 | |
A | 26 359 | 0 | 0 | 0 | |
P681H | 99.69/99.97 | ||||
C | 0 | 374 | 832 | 37 442 | |
A | 26 351 | 0 | 1 | 34 | |
T716I | 99.94/99.99 | ||||
C | 2 | 374 | 832 | 37 528 | |
U | 26 351 | 0 | 1 | 23 | |
S982A | 100/100 | ||||
U | 0 | 374 | 831 | 37 563 | |
G | 26 360 | 0 | 0 | 0 | |
D1118H | 99.98/99.97 | ||||
G | 0 | 374 | 834 | 37 579 | |
C | 26 358 | 0 | 0 | 8 |
Abbreviations: GISAID, Global Influenza Surveillance and Response System; SARS-CoV-2, severe acute respiratory syndrome coronavirus; WT, wild type.
aSource UK. For each mutation, mutations associated with B.1.1.7 shown in lower row.
bSource all. Available sequences from GISAID Nov, Dec 2020, and Jan 2021.
cSource all. All available sequence worldwide.
dSource UK. Available sequences from GISAID Jan-April, July, Nov, Dec 2020, and Jan 2021.
eSpecificity and sensitivity for differentiation B.1.1.7 from WT SARS-CoV-2 sequences.